MmuALTA0005681-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000075467 | Dnlz
Description
DNL-type zinc finger [Source:MGI Symbol;Acc:MGI:106559]
Coordinates
chr2:26206855-26207620:-
Coord C1 exon
chr2:26207293-26207620
Coord A exon
chr2:26206995-26206998
Coord C2 exon
chr2:26206855-26206994
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TGACCACCTCTCTAACCCAGCTA
3' ss Score
4.51
Exon sequences
Seq C1 exon
GCTTCCGGCCGCTGCGCCCGTTACCAAAATGGTCGACGCAGCTTCACGGGGCGGTGCAAGAAAAGGTGGCTAAGGATTCGCAGGCGGGATGTTGCGGACAGCGCTGAGCCGCATGCCGACACTACTTCGTAGTGTGCGGACCCGGGATTCCGGACCGCGGCGGCTTTGGGATTTGGGGGCTCGCCTAAAGACCGCGGAGAGACTTCGGGGCTGGGCCTGGGGCTGGGCCTCGGGCTGGCGGAGCTCGAGCTCCGCGCCGGGATCAGGGCGTGCGGCGGCGCTGGGGCGCGTGGAAGCGGACCACTATCAACTCGTCTACACCTGCAAG
Seq A exon
CTAG
Seq C2 exon
GTCTGTGGGACTCGGTCATCCAAGCGCATCTCAAAGTTGGCCTATCACCAGGGCGTGGTCATCGTGACTTGCCCTGGTTGCCAGAACCACCACATCATCGCAGACAACCTAAGCTGGTTCTCTGACCTGAAGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075467-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115514=HypA=PU(41.8=35.0),PF052078=zf-CSL=PU(34.1=18.8),PF051807=zf-DNL=PU(10.3=8.8)
A:
NA
C2:
PF0115514=HypA=PD(55.2=78.7),PF052078=zf-CSL=PD(61.4=57.4),PF051807=zf-DNL=FE(67.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCGGACCACTATCAAC
R:
GCCCTGGTGATAGGCCAACTT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: