MmuEX0020068 @ mm9
Exon Skipping
Gene
ENSMUSG00000026867 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:MGI Symbol;Acc:MGI:1913941]
Coordinates
chr2:34533953-34539915:-
Coord C1 exon
chr2:34539702-34539915
Coord A exon
chr2:34537155-34537227
Coord C2 exon
chr2:34533953-34534150
Length
73 bp
Sequences
Splice sites
3' ss Seq
GAATTTTGGGTGGTTTTCAGGGT
3' ss Score
7.05
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACTTTCAGAAACTTACTGCTGCTGATGATAAAACGGCTCAGGTGGAGGATTTTCTACAGTTCCTGTATGGTGTGATGGCTCAGGATGTCATATGGCAGAATGCCAGTGAGGAGCAGCTGCAGGATGCCCAGCTGGCCATCGAGCGGAGTGTGATGAATCGGATCTTCAAGCTTGCTTTCTACCCTAACCAGGATGGGGACATACTTCGTGACCA
Seq A exon
GGTTCTGCATGAACATATCCAGAGATTATCTAAAGTAGTGACTGCAAACCACAGAGCTCTGCAGATCCCTGAG
Seq C2 exon
GTTTATCTCCGTGAGGCACCATGGCCATCTGCACAGTCAGAAATCAGGACAATAAGTGCTTACAAAACGCCCCGCGACAAAGTGCAGTGCATCCTGAGGATGTGCTCCACCATCATGAACCTCTTGAGCCTGGCCAACGAGGACTCTGTCCCCGGGGCAGATGACTTTGTTCCTGTGTTGGTGTTTGTGTTAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026867_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0220413=VPS9=PU(56.3=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGAGTGTGATGAATCGG
R:
CCTCAGGATGCACTGCACTTT
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: