RnoEX0037736 @ rn6
Exon Skipping
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13753748-13757108:-
Coord C1 exon
chr3:13756895-13757108
Coord A exon
chr3:13754984-13755056
Coord C2 exon
chr3:13753748-13753945
Length
73 bp
Sequences
Splice sites
3' ss Seq
GAATTTTGGGTGGTTTTCAGGGT
3' ss Score
7.05
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACTTTCAGAAACTTACGGCTGCTGATGATAAGACGGCTCAAGTGGAGGATTTCCTACAGTTCCTGTATGGTGCGATGGCGCAGGATGTCATATGGCAGAATGCCAGCGAGGAGCAGCTGCAGGATGCCCAGCTGGCCATCGAGCGGAGCGTGATGAATCGGATCTTCAAGCTTGCTTTCTACCCTAACCAGGATGGGGACATACTGCGTGACCA
Seq A exon
GGTTCTGCATGAACACATCCAGAGATTATCTAAAGTAGTGACTGCAAACCACAGAGCTCTGCAGATCCCAGAG
Seq C2 exon
GTCTATCTTCGTGAGGCACCGTGGCCATCTGCACAGTCAGAAATCAGGACTATTAGTGCTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTGCTCCACTATCATGAACCTCCTGAGTCTGGCCAATGAGGACTCTGTCCCCGGGGCAGATGACTTTGTCCCCGTGTTGGTGTTTGTGTTGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-'41-42,'41-41,43-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0220413=VPS9=PU(56.3=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGCAGGATGTCATATGG
R:
TTTCTGACTGTGCAGATGGCC
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]