DreEX0034286 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34427193-34429361:-
Coord C1 exon
chr8:34429148-34429361
Coord A exon
chr8:34427479-34427551
Coord C2 exon
chr8:34427193-34427390
Length
73 bp
Sequences
Splice sites
3' ss Seq
GGATGTCTCTTTTATTCAAGGCT
3' ss Score
4.03
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
CATTTCAGGGATGCACAGCAGCTGATGATAAGACAGCAGCCGTGGAGGATTTCCTGCGTTACCTGTATGGAGCCATGGCCCATGATGCCATCTGGCAGTACGCCAGTGAAGAGCAGCTCCAGGACGCACAGATGGCCATCGAACGCAGCGTCATGAACCGCATCTTCAAACTGGCATTCTACCCCAATCAGGATGGGGACATCCACAGAGACGA
Seq A exon
GCTATTCCATGAGCACATTCAGCGACTGTCTAGAGTGGTGTCGGCCAATCATAAAGCTCTGCAGATCCCTGAG
Seq C2 exon
GTGTATCTGAAAGAGGCTCCGTGGCCTTCTGCACAGGCTGAGATCAAGACCATCAACGCCTATAAGACCCCGCGAGATAAAGTGCAGTGTATCTTGCGCATGTGCTCCACCATTATGAACCTGCTCAGCCTGGCCAATGAGGATGCTGTACCCGGCGCGGATGACTTCGTCCCTGTGCTCGTCTTTGTTCTGATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0220413=VPS9=PU(56.3=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACGCCAGTGAAGAGCAG
R:
GGTCTTGATCTCAGCCTGTGC
Band lengths:
170-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]