BtaEX6046158 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96203404-96207009:+
Coord C1 exon
chr11:96203404-96203617
Coord A exon
chr11:96205562-96205634
Coord C2 exon
chr11:96206812-96207009
Length
73 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGGGGCATTTTCAGGGT
3' ss Score
6.76
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACTTTCAGAAACTCACAGCCGCTGATGATAAAACCGCCCAAGTGGAAGATTTTCTGCAGTTCCTGTACGGCGCGATGGCCCAGGACGTCATATGGCAGAACGCGAGTGAGGAACAGCTTCAGGACGCTCAGCTGGCCATTGAGAGAAGTGTGATGAACCGGATCTTCAAACTTGCCTTCTACCCAAATCAGGACGGGGACATACTCCGTGACCA
Seq A exon
GGTTCTTCATGAACATATTCAGAGATTGTCTAAAGTAGTGACTGCAAATCACAGAGCTCTGCAGATACCAGAG
Seq C2 exon
GTTTATCTTAAGGAGGCACCGTGGCCCTCGGCACAGTCAGAAATCAGGACAATAAGTGCTTACAAGACGCCCCGGGACAAAGTGCAGTGCATCCTGAGAATGTGCTCCACGATCATGAACCTCCTGAGCCTGGCCAACGAGGACTCCGTCCCAGGGGCAGATGACTTCGTCCCTGTGCTGGTGTTTGTGTTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544-'31-32,'31-29,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0220413=VPS9=PU(56.3=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCATTGAGAGAAGTGT
R:
AGGATGCACTGCACTTTGTCC
Band lengths:
179-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]