MmuEX0009162 @ mm9
Exon Skipping
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26208005-26209925:-
Coord C1 exon
chr2:26209877-26209925
Coord A exon
chr2:26208461-26208534
Coord C2 exon
chr2:26208005-26208081
Length
74 bp
Sequences
Splice sites
3' ss Seq
AGCACAGATCTTCCTTTCAGGTG
3' ss Score
7.2
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
CTCTCACTGCCTCAGGATCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
Seq A exon
GTGTACTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTTATGGCTCTGAACAAGGAGCATCTTTCACTGACCCAT
Seq C2 exon
GGCATGGGGCCCAGCAGCAGCGAGCCCCCGGAGAAGGAGCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCCTCAGGATCTGGAG
R:
CTGCGGTAGTTCTCGAAGCTC
Band lengths:
123-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types