HsaEX0012459 @ hg19
Exon Skipping
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:16391]
Coordinates
chr9:139258935-139261297:-
Coord C1 exon
chr9:139261252-139261297
Coord A exon
chr9:139259593-139259669
Coord C2 exon
chr9:139258935-139259011
Length
77 bp
Sequences
Splice sites
3' ss Seq
GGCACGACTCTCCTTTCCAGGCT
3' ss Score
6.35
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
CTCTCACTCCCCCAGGACCTGGAGGACACCCAGCTCTCAGACAAAG
Seq A exon
GCTGCCTTGCCGGCGGGGGGAGCCCGAAACAGCCCTTTGCAGCTCTGCACCAGGAGCAGGTTTTGCGGAACCCCCAT
Seq C2 exon
GACGCAGGCCTGAGCAGCGGGGAGCCGCCCGAGAAGGAGCGGCGGCGCCTCAAAGAGAGTTTTGAGAACTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.792 A=0.705 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCCCCCAGGACCTG
R:
TGCGGTAGTTCTCAAAACTCTCT
Band lengths:
120-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)