HsaINT0027755 @ hg19
Intron Retention
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:16391]
Coordinates
chr9:139259593-139261297:-
Coord C1 exon
chr9:139261252-139261297
Coord A exon
chr9:139259670-139261251
Coord C2 exon
chr9:139259593-139259669
Length
1582 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGCACGACTCTCCTTTCCAGGCT
3' ss Score
6.35
Exon sequences
Seq C1 exon
CTCTCACTCCCCCAGGACCTGGAGGACACCCAGCTCTCAGACAAAG
Seq A exon
GTGAGGTGGGGACAGCAGTACACCCAGAGGCCTCCCAGCTTCCCCAAGTGAGGCCCATCTTCAGCACAGGCAGCCCGTGCCGCAATGCCTGTGTCAACCCCCACAACCCCCACTCCACAGACAGGGAAACTGGGGCTGGGGATAAGTAAAATGGTCAAGGTCACCTAGAGAACAAACTACAGAGCCCAGCTGGAACCCAGGGCCCCAGCTAGTGGGACAAGTGTCCCCTGGGGTGGAGAGTGTGGGGGTCTGGGCAGCCCCCATGGGCTGCAGAGGTGAGCAGGCCCACCGTCCTGAGAGTGTGGGGCCCCTCTGGGCAGCCCCCACGGGGTGCAGAGGTGAGCAGGCCCAGTCCTGGCTGCTCCAAGCTTCCTCCTGGACAGAGGGAGGTGGTAACGAGCGAACGACCAGGTGCATGAAGCTAGAAGATGGGGCGAGATGGGGCCCCACGTGGCTTGAGGGAAAGGGCTGAATGCAGGGGTGGCCAAGGGCCTGCTGTGTCCCGGTGCAGTGGGGGTAAGGCAGTGGCAGGGGCTTCTAGCGGGCAGGGCAGGCCCCCTCTGCCTGTCTGGGGGAAGGACTGGGTGGCTAGCTGGGAGCAGCTCCCGAGTGTCCAGGAGTGGGCAGTGGTGATGAGGTAGGTGTTTGCACTGAAGGTGCTGTCAGGTAGGGGTTGGGGAGGGCCCAGCAGAGGGGTCCTGGGAGGCTGCACCGGAGTTGGACAAGCTTCCTGAGTACCAGGCCGTGGCCTCCAAGCAGAGGCGGAAGGGGAAGGAGGAGCCGCAGACGGGGAAGTGAAGACCAGCGCCTTTGGCTGCAGCTCAGAACACTTGAACATGGGGATGCCAAGCCCCCATGTAGGCACAGAGGCGAGCAGGACCCAGGAGTCCGGCTCAGGCACTGCCCCCATCCCCCTGGGTGGCTGTGGCAGGAGCAGGGGCAGGTGTGAAGGTTGGAGGGTGAGCAGGGGAGGGGCTGGCTCTAAGGGGCTGCCAATGGCCAGGACAGCCCTGGCCTGGCCCTCACCGCAGTGGGGCTGAGACTGGACGTGCGTGGTTTCTGCCCAAGGGTCCTGATCCCTGGTCTGCCCAGGTCCTGGCGGTTTCTGAGGGGGTCCAGCCGCCTGAAGGTTCTCTCCCAATTGCTGCAGTACCCCTGCCCCCACTTCAGGAGGACCCAGACAGCCACTGTAGCTGTCCCCAACTCTCTCCCCAGGGCCGCCATGCCCACAGATGCTTTGGAGTGATGGGGGACGGTGCTGCTCAGGCCCAGGGTTTAAGTTCCCCCGAGGTCTGGGAGGCGTTCCTCCCTGGCAGGCAGCCAGCTCGGGGGAGGGATGGTCACTGGCGGGAGCGTTGGGCCTGGGCTGGCATCTGGCGGCCTCCTGGAGCAATGAACAGGCAAGCGAGGCCATAAGGCCTCAGTCTCATCTACAGAAAGCAGAGTCTACACTGGACCCATGTGGGGATCCCACCAGGCCTTGGAAGACAGCCCCACTGCAATGCCGGGGAGGGGTGGGGCAGCCGTGCTATACGTGGCCCAGCAGATGGGCAGGTCCCACAGGCACGACTCTCCTTTCCAG
Seq C2 exon
GCTGCCTTGCCGGCGGGGGGAGCCCGAAACAGCCCTTTGCAGCTCTGCACCAGGAGCAGGTTTTGCGGAACCCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-CARD9:NM_052813:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=0.705
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)