BtaINT0031597 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103876880-103878225:-
Coord C1 exon
chr11:103878180-103878225
Coord A exon
chr11:103876957-103878179
Coord C2 exon
chr11:103876880-103876956
Length
1223 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACAGGCACTCTCCCTTCCAGGCA
3' ss Score
8.09
Exon sequences
Seq C1 exon
TTCTTGCTCCCTCAGGATCTGGAGGATACCCAGCTCTCAGACAAAG
Seq A exon
GTGAGGACACCCGCCACCTGTCCCGGAGGAATCTGACCAAGGCCTCCTCGTGGTGGCAAGTTGGCTCCTGTCTTGACCTTCAGCACACACGCTGCATGATGCTGGTGCCGGGGGATGCGTGCCCCAGCCCTGGACCCATGACCTTCATGCCTCATTTCAAAGATGGGCACATTGGGGCTCAGAAGGATGAGCAACCCCCAGAAAGCGGACAGGACCCCCCTTTGAGCCTGGGGCCCAGGCTCCGTCAGCTTCCGCTCGGCCCGGGGATGCTGAGAGGAGGGGCACCCGCCCTCTGGAGCAGAGAGCGGGGCAGTGGCCACTGCCCGGGTGCAGCCTCCCAAGAAGTGGGGACAGACAGGGAAGGGGGTACAGCTCCGGGTAACCGCAGTGGGGGCTTCAGGCGGCGGAGGTGGGATCACTCTGCCTGCCTAGACACAGGGTGTGGGGTGGCCCCGGGGGGATGATGAGGGGCTGGCTCCGAAGCTGGGTGTCAGATGGGAATTTGGGAGGGTGGGGGCGGGGTGGGGGGAGGGGCGCTACCACAGAGGTAGCGTGTGAAGCCAGACAGACTTCCTCAGCGTCAGACCCCAGCTGCTGGGGGGGCGCCGAAAGAGGAAGAGGCAGCAAATGGAGAAGTGAGGACTCGGTCCCTCTGCTGCCGCCCAAAGACGCAAACTTGAAGCCACCGAGCCCCCACGGGGGACGGGCAGGAAGGACCCACAGGCCATGAGTCGGCAGTGAAGGCCGCTGGCCAGCCTCGGAGCCCCAACCCTGGGCTGGCATGGCGCCTTGCAGGAGGTGGGGCAGGGTCCAGGGTAGAGGCCAAGGAGGAGGGAAAGGTGTGAGCTTCAGGGGAAGACCTGGGCCTGGGCCGCCCCCACCCCCATGTCCCTGAGACCTGGGATCCATACCCGCCCCCCACTGTGGACAGTTCTGGAGAGCCAGCCCATCAGAGCACTTTTTCTGAGGGTCCTGAGCCTTGGGCCCTTCCAGATATGGAGGGAGCCCTAGGACCCCAACCCCTGCTTCCAGGGCACCTGAGCCGTCTACTCGGGGGGTTAGAAGTGAACGTTGAGTCCCTGTGTCTACACAACGGGAATCCTGGCAGGTCCAAGTGAGGACCCAGGAGGTGGCACAGGGCTGGCCCAGGTTGAGGAGGTAAGAGGTACCAACCAGTGTGACCCTGGCAGCTGGGCAGGACCGACAGGCACTCTCCCTTCCAG
Seq C2 exon
GCAGCCTGGCCATCGGGGAGAGCCCGGAGCAGCCGTCTGTGGCTCTGCAGGAGGAACAGCTATCACTGACCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572:ENSBTAT00000008634:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development