RnoINT0029379 @ rn6
Intron Retention
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3799156-3800555:-
Coord C1 exon
chr3:3800507-3800555
Coord A exon
chr3:3799230-3800506
Coord C2 exon
chr3:3799156-3799229
Length
1277 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGCACAGCTCTTCCTTTCAGGTG
3' ss Score
7.84
Exon sequences
Seq C1 exon
CTTTCACTGCCTCAGGACCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
Seq A exon
GTGAGGAGGTGGGGATGCCGTGTTCTGCCAGAGGCATCTAGGCTGCAGTCTCCTGGCCTCCCTAAACCCCAGCCCGTCCTCAGCACATAAAGCGGTGTGACTTACCTTGTCTCAGAATCACACCGCTCCAACCAAAGACGATGCTCCCTGAGGCAAGGAGAGGCAGTGGCAAAGGGCTGACCCTTAGGCTCACGCACCTAGAGAATAAGGAATCTGGTTTGAACATGGGTCTTAGATCTTAGGGTCTGTGGCTCAGAGGACAGTGAGTGTGGACGCCCCATCCTGCATCTTTCCCTCCCAGCCTTCTTCCTGCAGAAGGAGATGCTAGCCAGTATCCAGATGAGCTCAATGAGGAAGGGAACGGTAGCGCTATGTGACAGGGTAGCAAGCAAGGAGGTGGGGACCGCGCTATCCACAGTAGCAGGCTGCCAGACAGGCCACTCCTCTGATCTAACAGTTGGGGGACAGCAGTTGGGGCAGCGGAGGGTGGGTGGTGAGAGGGTCTAGTGCAGGGAGGAGCCCTGGGAGCTTTCGTGAGAAGTCAGACAGACTTCCTCAGCTCAGCCTTACCCCAGGCTATAACCAAAGGCAAAAGGGGAACAAGAGGTGTAGATGGAGAAGCATGGGCCACCCACCGCAGTCCCCAAGACCCAACCTGAGGCCACCAAGCTCCACATGGGCATACGAGGAGAATGCAAGAGTAGCCAGCTCTCTTGAAGGCACACCAGCAGTTAGGCACCATGAAAATGAGAGGGGAAGGGGCAGGGCTCTCATACCCCGAGTCCTCTCTGGATATAACTGTTTCTTGATATTCATAGCCCTCTCAGCACACCTTCTGCCTGGAGCCCTGAGCCTTGGTCTGCCTAGGGCCTGGGGCAAGCTGGCTCTGACCACCCGGAATGAACGTTCTTGTAACTAATATGGTGTACTTGCTCTACACTGAGGCTGCCCCTACCCCACCCATGGGAACCACTAGGCACAAAAATTTTGCCAAGCTAATGGACTGGGGACCTGGAGTCTTTCCTACCCATCTGTCCTTGTGTTTGGTGACAGTCAGCTTGGGAGGTATGGGTGAGTGATGGTAGGAGCTCTGTTGATGTAGCAGCCAAGGGCTCAGCCTGTTCCTATCTGTGAAGTGCAGTCTCCACTGGATTCATGTGGTGTGAGGGTCCCAGTCCAGAAGACTGGCCTAGGCCAGTGCTAGTTGGGCTGTGAGCAGAGGAAGGTGGTGACTATGTCAGCAAGCGAGCCACTGTAAGCACAGCTCTTCCTTTCAG
Seq C2 exon
GTGTCCTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTCGTGGTTCTGAACAAGAAGCATCTTTCGCAGACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470:ENSRNOT00000091484:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]