RnoEX0016915 @ rn6
Exon Skipping
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3799156-3801007:-
Coord C1 exon
chr3:3800966-3801007
Coord A exon
chr3:3800507-3800555
Coord C2 exon
chr3:3799156-3799229
Length
49 bp
Sequences
Splice sites
3' ss Seq
GGCATGTCTCTGTCTGGAAGCTT
3' ss Score
3.76
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGCTCTGACTTGGAAGACAGTTCCCCCAGGAACTCCCAGGAG
Seq A exon
CTTTCACTGCCTCAGGACCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
Seq C2 exon
GTGTCCTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTCGTGGTTCTGAACAAGAAGCATCTTTCGCAGACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470-'11-17,'11-15,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGACTTGGAAGACAGT
R:
ATGGGTCTGCGAAAGATGCTT
Band lengths:
116-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]