MmuEX0009161 @ mm10
Exon Skipping
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26352941-26354871:-
Coord C1 exon
chr2:26354830-26354871
Coord A exon
chr2:26354357-26354405
Coord C2 exon
chr2:26352941-26353014
Length
49 bp
Sequences
Splice sites
3' ss Seq
GGCGTGTCTCTGTTTGGAAGCTC
3' ss Score
4.22
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGCTCTGACTTGGAAGACAGTTCACCCAGGAACTCCCAGGAG
Seq A exon
CTCTCACTGCCTCAGGATCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
Seq C2 exon
GTGTACTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTTATGGCTCTGAACAAGGAGCATCTTTCACTGACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928-'15-25,'15-24,17-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000028294fB7029
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGACTTGGAAGACAGT
R:
ATGGGTCAGTGAAAGATGCTCC
Band lengths:
116-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types