BtaEX0007041 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103876880-103878540:-
Coord C1 exon
chr11:103878499-103878540
Coord A exon
chr11:103878180-103878225
Coord C2 exon
chr11:103876880-103876956
Length
46 bp
Sequences
Splice sites
3' ss Seq
GCCCCATGTCTCTTGGGAAGTTC
3' ss Score
3.1
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGCTCTGATCTAGAGGACAGCTCACCCAGGAATTCCCAGGAG
Seq A exon
TTCTTGCTCCCTCAGGATCTGGAGGATACCCAGCTCTCAGACAAAG
Seq C2 exon
GCAGCCTGGCCATCGGGGAGAGCCCGGAGCAGCCGTCTGTGGCTCTGCAGGAGGAACAGCTATCACTGACCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.875 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATCTAGAGGACAGCTCACC
R:
CTCTGGGGTCAGTGATAGCTGT
Band lengths:
116-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development