HsaEX0012458 @ hg38
Exon Skipping
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr9:136364483-136367257:-
Coord C1 exon
chr9:136367216-136367257
Coord A exon
chr9:136366800-136366845
Coord C2 exon
chr9:136364483-136365217
Length
46 bp
Sequences
Splice sites
3' ss Seq
ATCTTGACTCTCTTTGGAAGCTC
3' ss Score
4.22
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGCTCCGACCTGGAAGATGGCTCACCCAGGAGGTCCCAGGAG
Seq A exon
CTCTCACTCCCCCAGGACCTGGAGGACACCCAGCTCTCAGACAAAG
Seq C2 exon
GCTGCCTTGCCGGCGGGGGGAGCCCGAAACAGCCCTTTGCAGCTCTGCACCAGGAGCAGGTTTTGCGGAACCCCCATGTAAGGCTTCCCCGGGGTGGGGTCCTCCCAGCCGTGGGCCTCAGGGTGACCGATCACAGGGAGAGTGGCTCCCTGCCCTGGGCACCCCCTGCGGTGGCCCCGACGACAGCTGAGGAGTGACCACAAGGTCTCTGCCCACAGTGCTCGGGGTGCGGTGTCTGGGCTGCGAAGTGGATCCCCCTTTCTTGGGCACTGCAGCAGCTTGGGGGGCTTTTTGGACGTGGATGTGCCTGGTCCTGGTTTTCCGAGGGCCTTTACAGTGGATGAGGAGGTGAACACAGGAGTCCTGAGAGCAAGCACCACCTCGGGCTTTGTTGTAGAAACAATGGCCCGGACCCCAGGCTGGAGCCGTGGCTTGGCCTCCTGGGTGTGTCTTGGCATCTGAAATGCAGGCTACCCACACCGGCTCACCTCCAGGGGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.906 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACCTGGAAGATGGCTC
R:
CCCCGGGGAAGCCTTACAT
Band lengths:
133-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development