RnoEX0016916 @ rn6
Exon Skipping
Gene
ENSRNOG00000051470 | Card9
Description
caspase recruitment domain family, member 9 [Source:RGD Symbol;Acc:708370]
Coordinates
chr3:3798660-3800555:-
Coord C1 exon
chr3:3800507-3800555
Coord A exon
chr3:3799156-3799229
Coord C2 exon
chr3:3798660-3798736
Length
74 bp
Sequences
Splice sites
3' ss Seq
AGCACAGCTCTTCCTTTCAGGTG
3' ss Score
7.84
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
CTTTCACTGCCTCAGGACCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
Seq A exon
GTGTCCTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTCGTGGTTCTGAACAAGAAGCATCTTTCGCAGACCCAT
Seq C2 exon
GACACGGTGCCCAGCAGCAGCGAGCCCCCGGAGAAGGAGCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051470-'12-19,'12-17,13-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCACTGCCTCAGGACCTG
R:
CTGCGGTAGTTCTCGAAGCTC
Band lengths:
126-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]