BtaEX6047158 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103876349-103878225:-
Coord C1 exon
chr11:103878180-103878225
Coord A exon
chr11:103876880-103876956
Coord C2 exon
chr11:103876349-103876431
Length
77 bp
Sequences
Splice sites
3' ss Seq
ACAGGCACTCTCCCTTCCAGGCA
3' ss Score
8.09
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTCTTGCTCCCTCAGGATCTGGAGGATACCCAGCTCTCAGACAAAG
Seq A exon
GCAGCCTGGCCATCGGGGAGAGCCCGGAGCAGCCGTCTGTGGCTCTGCAGGAGGAACAGCTATCACTGACCCCAGAG
Seq C2 exon
GACGCAGGACTGAACGGCCGGGAGCCCCCAGAGAAGGAGAAGGGCCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572-'15-17,'15-15,18-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=1.000 C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTCCCTCAGGATCTGGA
R:
CTGCGGTAGTTCTCGAAGCTC
Band lengths:
127-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]