MmuEX0009162 @ mm10
Exon Skipping
Gene
ENSMUSG00000026928 | Card9
Description
caspase recruitment domain family, member 9 [Source:MGI Symbol;Acc:MGI:2685628]
Coordinates
chr2:26352485-26354405:-
Coord C1 exon
chr2:26354357-26354405
Coord A exon
chr2:26352941-26353014
Coord C2 exon
chr2:26352485-26352561
Length
74 bp
Sequences
Splice sites
3' ss Seq
AGCACAGATCTTCCTTTCAGGTG
3' ss Score
7.2
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
CTCTCACTGCCTCAGGATCTGGAGGAGGATGCCCAGCTCTCAGACAAAG
Seq A exon
GTGTACTGGCAGACAGGGAGAGCCCAGAGCAGCCCTTTATGGCTCTGAACAAGGAGCATCTTTCACTGACCCAT
Seq C2 exon
GGCATGGGGCCCAGCAGCAGCGAGCCCCCGGAGAAGGAGCGGCGGCGCCTCAAGGAGAGCTTCGAGAACTACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026928-'17-30,'17-25,18-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGCCTCAGGATCTGGAG
R:
CTGCGGTAGTTCTCGAAGCTC
Band lengths:
123-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types