MmuINT0051755 @ mm9
Intron Retention
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32163991-32167862:-
Coord C1 exon
chr2:32167647-32167862
Coord A exon
chr2:32165158-32167646
Coord C2 exon
chr2:32163991-32165157
Length
2489 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCTTCTGCTTTTCCCCAGCAG
3' ss Score
8.72
Exon sequences
Seq C1 exon
ATCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGATCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
Seq A exon
GTGAGTAGGGGCTTAAAGCCCCGGGAAAGGCCGCCAGGCGGGCGTAACCCGGAGGGAGGTAGAGTCGGATAGATCCTCGGCCTAGCAGCAGAAGCGACCCTCTCCATCTTAGGCGTTGGGGTCGTAATGCAAGGCCAAGGGACCTGCGGCCACGGGCAGGCGGTCCTGCCCCGCAGGGGGCGCTGAGTCCCGGAGGTGGTCGTTTCTGGGAAGGGGGCTCTGGGGCTCAAACCACTTGCCCCCTTCTTTTCAGCACTTGCATGGCGCTTCCCTCTTTTTTTCATTTTCTCTCTGTGGCTCCCACACTTTGCATTTCTTAAACCCTTGCCTTCCATCCTCCTCCATTCCACTCTTCACTGACCCGGCCCAGCTCCTGGTGAGCCTAACTCAGGTCTAGGTTTCTGAACCGTGTGGTTTTCTTCAGTTACATTCAGAGCTACCTTGATGCCCCACTTTCCCCAGCTCTGACTCTTTTGAGCTGTCCCAGAATGCTGTTCAGCCTCTGGCCCACAGTGTCAGGCCAGGCTGTGACTGTGTGACCAAGCAAGGTGTGATGATGTGTATGTGGGCGTGCACACGGGTGTGAATGTGAGATCGGCACCCAGGTGCGGACTAGGATAGAAAGCAGCTGGGGATGGGATCTAGGAATGGTGAACAGTCTGGTGGTCTGAAACCAGATGGTGGGTAGGGACAAGGATCAAAGACTACCCTGCTGCTAGAGATCTCCAGGAAAAAGGAATATACTTCATCCCTTGGCTTTGCCTTCTTTATCCATGACTGGCCTTCCAGGAAGCTCACTCTAGTAACCAACTCAGTCTGCCCTGTTTCTGCTGACTGTGGCTGGTCTCTGAGAAAGAACACATGATCTGATAGACCAAAAGCATCTATCTGGGAATCTAGATGACTGAAGGACAGAGCTAGGGGCCTAGCCCCCATACACTAAACGAGGCAGGGATGGGCTTACTCTGTGGGACTCTAATGTCTGGAACAGTTAAGACAGGACTGGGAGTCCAGAAATGCTGGTTCACTTCCCTTAGGCAAGTCATTTTCCCTCTCAGGGCTTTAGTTTCCTTCTAAATACATGTGTGTCCCCTGACATTTCCCCAGGGGAGTGTGAGATTGACAGAGACAGTGGGCTGCTTTACTAATGGTCAATGGTAGGGTGGGGTAGGTTGGAGATTTGTAGAGACTCAATGATATAGGGAGCCATGGAAGGTTCTTGAGCAAAGAAATGACAGCTGGATCCTAAAGTGCAAGCCCTGTCCTTTACGGAGCCCTATGGTAACCCTGTCAGCACACCAGGCCTGGATGTGCAGGGAGCTGGTGCAAAGGCCTTCTCTGTGCAGGCGAGCTTCTGTGTTGTGACAGCTCATGCGTGTGCTTCTGTGTGCTGAGTGGCTGCATGTCCCAGATCCGTGCTGCACGACGTATTGGCCGGCAATGGTGCTGGGCACTGGGAGGTGGGAGGGAGATATATGCGTGTTTGTGGGCATGTGTGTTAACGTGTGCACGCAGGGCCTTAAGGCCTCACAGCATGTGTGTGCACGCCCAGGCGTGTGCGTGTGTGTGTCCCCTAACCCCCAGCCTGGCCCACCTGTGTGTTTGTGAACTGCCCTGTTGATTTCGTGCTGTCTTTCAGAATCACTATCAGTGACCCCTGAGGAGTGTCAGCTACGGTAGGTTATGCTCTCAGCCTGCTGCATGAACAGTGTGTCTACCCCTCCCTCCTCGCTGCACCAGCTCCATGCTGAGGACACCTGGGACCCCTGAGCCAGGCCCCTCCTCCTTCTCCTGCAGCTCTGGACTCCCTCTTCCTGTCCTCTTCCAGCTGGCTCTCTCACTTCCCTTTCCAGTGAGCCTCGGGACTCAGCGCCACTACTCAAGGCCTTCTTGCTTAAACTGAGGGCTCTTGGAACAGGTTTCATGTCCAAGACGGTAGATGTGGGTGCTCCCTGGAGACACCAGACCACTGTTGACAGTGTAGGGACTAAGAACTAGGAGAGGGTGTCTTCAGCCTCTGAAGGGGCCAGAAGCGTTAGGACCCCCTCTTCATACCTACTCTGAACTATGCTGCCAAGATAAGAGCTTTCTCCTTCCAGCCTAGGAGCATGGCGACTAAATTCACCACAGGGCAAGCATGAGAATCGCGCTGGCAAAGCCAGGCTCTGACTGGTGACTTTAGACAACTTAAGAGCCTTTGCCTTTCTGCCAGCGCCTGAGGGCTCGCAGGCAAGGTGAGGATCTCATTCATCCTTGACATTGCACACCTGTAGCTAACAGCCACCTCGTCAGCCCCCGACATAGAGCCAGCCCATCAGCTCCAACATTTGACCTGTTTTCAGAGTGACCTGTGCCTTTTAGCCGAAGGCAATGCATTGTCTACTGACTGGGAAAGTCAACTTGAGTTCTGCCTGGCTGGCCACAGATCTCGGTTACCCTGTCCCAACTCTTCCCCAGCCATTGACGCTCACCCTTCTGCTTTTCCCCAG
Seq C2 exon
CAGGAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAACGGAGGCTCCCCTCTTAGACTTATAAGTCTGTGGCCGCAGGCATCGGCTGCCTGCCTCCCAGCCTCCCCAGGGTCCCCTCAGAGGACTCCTGACTTTCTGACCACCTGAGGGGCCTCCAGCGCTCCCTCCAGCCATCCCCTTTAGCTTCAATCTCCTGGTTCAAGCACTTCTGGCCTCATGGCTGTTACATGGGACTCCCTGAGGCTTGGGGTGGCCCTGAGCCAGTGAGATGAGAGACAGTGAGCAAAAATGAGGGAGGCCCTGTGGTGCATTGCCTGGGTGGTGTGTGAGAGGCCGTGTGTGTGGCAAGAGAGGGCCACCAGCCTCTACTCAGACTACCTGCTAGTTACGGCCCAGCACCCCATCTTCCCTTTCATTCATCAACTGTGCATCTCTTCCGGGAACCCTGCCCACATCCACACCTGCCTCAGCCCCTGCCTCTGCTGGAGGTGGCTGCTCTTGCCTTACCAGCTCTCCTTCCTTTTCTCTCTTCCGTTCTCTCTCGGCTTTCTCTCCAACTGCCAGCCGATCGGGTCAGGCAAGTCCGTCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCCTACTCCTCGGAGACCTCCCTTACCAAGCCTGCCTGGACAGCTGTTCTGTGACTTGACAGTGGCTCCCCCGGCCCCAAAGCGTCCTATTCATCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGATGTGATGTTGGTGAAAACTTGTGCCCCTCTGTGGTATTGCTCCTGCGACATTCTATAAATATCTATAAATATACCTATATATACATATATATACATATATATGGCTGACACAGCCTCGCCTGTAGTGTCAGAATCAACCACCATGCTGTCCTTGTGGAGTCTTGTGGTCCAACAAGGGAACGCTGTCATCCTGACAACCCCCCCTCCAGTGTACCACCTCCAGTGAGCCCCCCTGTCCTCCTGGCCTGTGAACAGCCATCCCCTTGGCCATCCCAACCCTGCAGCAAGGGGATGCTGCAGCAGCAGCAGCTGTGCAGTTCTCTGGTAGCCACCAGTCTTGCTGTCTCTTGGCTGAGAATAAAACCCATTTCTGGATCATGGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-Dnm1:NM_010065:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: