HsaINT1011683 @ hg38
Intron Retention
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128250725-128255244:+
Coord C1 exon
chr9:128250725-128250940
Coord A exon
chr9:128250941-128254653
Coord C2 exon
chr9:128254654-128255244
Length
3713 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTTTCTCTCCAACTGCCAGCCG
3' ss Score
4.85
Exon sequences
Seq C1 exon
GTCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCTTTCGGCCCTCCCCCTCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG
Seq A exon
GTGAGTAGGGGCTGAATGCGGCTGGAGAGGCTGCCGGACGGGCGTGGCCGGGAGGGAAATGGGGCTGGATTCCAGAGCATCGGACCTGGCCGCCAGAACCGGCCGTTTCTATCCCAGGCAATCGGACTCTGGGTGCCGGAGCCACGCCACGTGTGGCCGAGGGCTGGCGGAGCCTGCCCCCGAGGGAGCGCTGAGTCCCGGAGGTGGTCGTTTCTGGGGAGGGGGCTGTGGGGCTCGTCCCACCTGCCCCCTTCTTTCCAGCACTTGCATGGCGCTTCCCTCTATTTTCACTCTTGGCGGCCGCCCACACGTTGCATTCCTCCTCCTTTCTTCTTCTTGCTGTCCTCCATCCTCCATTCCGTCCAATTCCTCTCCCAGCCCCTGGGGAGCCTACCTTAGGTCTGACTCTGAACCCCGATCTGCTCTGAGTGTGTGGATTTCCTTCAGCTACCCTGATGTCCCCACTTCCCAGCCCTGACTCCTTTGAGCCATCCCAGGGGGTGTCCAGCCACTGGCCCACAGGAGCAGAGGCCAGGCTGTGACTGTGTGACTAGAAAGGTGTGTGATGTGTGTGTGGGCGTGCACACGAGTGTGAGAGTGTAAGCATGGCACCCAGGCCCGGGCTAGGACAGGAGCAGCTGGGGAAGCAGCCTGGGCCGTGGGCAAACTGATGGCTTTTTTCCTCCCCCCAACCACCCCCTCCGCGACTTCTGGCCCTACCCAGTCTAAACCAATGTGGTAGGGGTGGCGGCAGGGGCAGGGATGGGAGTGCTTGAAGCCTGCTTCATTCCCAAAGATTTCTAGGGAAAAGCTTTCTACTACATCCTTTGGCTTGACCTTCTTGACCCATGACTCTCTTTCAAGGAAGTTCACTCCAATTCCCAGTCTGCCCTGTTTCCACTGGCCACATTCTCTAAGGAAGAACACAGCAGAACAATAGCATCTGTTTTGTTTCTGCATGGCTGGAGGGTAGGGCTGTCGGTCTAGCACCCATAAACCAAAATGAGGCAGGGATTGGGGCTTGCCCTATGATGCTCTGATGACCAAAGCAGATGCGTAGAGGCAAGCAGCATGGTATTGGGCAAGAGGACTGGACTGGGAGTCCAGAGATGCTGCTTCACCCTGGGCCTTTAGACACGTCTCTTTCCCTCCCAGAGCCTCAGCATCCCTTCTATCAAATGATGACATTCTGCCTTTTTCCCAGGGCGGTTGTGGGGATCGAGGGAGACAGTGGCTATAGGGATGCTGTGTTAACTGCAGATGCAGCCGTAGGAGCACTTTGCTAACTGCCAACGTGAGTTCAGATTCTTCAGGGTATTTGGCACCCAGGTCTATGGTGCGGTGTGAGATCTGTGATGTAAGGTTTGATGCCTGCCCCAACTCCAGTCTTGCTAACACACATGAAACATTTGGCAAATCATGACCCTACCTTGGGGAAAAGAGCAGTCTGGGAGAGCTTCTTCAAGGCAACCTGACTTCAGTGCAGTCTGAGGCATGGCTGAGATAGGCTTACGTGGCAAGGAATCAGGAGGGTATCTGGGCCAAGAGCTGCAGTGTGGGCAGAGGTGTAGTGTGGGCTGCAACGAGGACAGCCACTGGACAAAGCAGAGAACAGAGACAGAATGAGGAAGAGCTCTGTGGGCAGGGTGGGGCGCAAGGTGGAGAACCTTCAAAGTCTGAAAAGTTTGACTTGTTGGGGCTCAATGCTGTGGGCAGTAGGGAACCACAGAAGGCTCTTAGGTGGAGAAATGACAGCTGGACTTTAGCGAGCAAGCCCTATCTCCATGAGCAGCACGGGTGATCCTCTAAGCACACCAGGCACGAGTGTGCAGGGAGCTGGTGCAAATGCCTCTGTGTGCGGGTGAGCTTCTGTGTTGTGACTCTGCCCACACGTGTGCTTCAGTGTGCTGAGTGGCTGCATGCCCCAGATCCATGCTGCACGCGCCGCCGGCCAGTGAGGGTGCTGGGCACTGGGAGGTGGCGGGGAAGGAGGCGTATGCGTGTTGTTTGTGGGCATGTGTGTTAGCGTGTGCATGTGGGCCATGGGGCCTCACAGCATGTGTGTGCACGCCCGGGCGTGTGCGTGTGTGTGTCCCCCACCCCCAGGCCGGCCCCACCCGTGCGTGTGAACTGCCATGTTGATTTCGTGCTGTCTTTCAGAATCACTATCAGTGACCCCTGAGGAGCGTCAGCCATGGTAGGTACATGCCTCACCGCCTGCTGCATGAACGGTGTGTCTGCCCCGCTGCACTAGCTCCACACGGGGCGCGCACCTGGGACCTCAGAGCCAGGCTCCCCGCCCCTCCCTTCTGCAGCTGCAGACTTGCTCTTTCCTCTTTCTGTCCTTGTGCCGCTGGCTCTCTCACCTCCCTTCCCTGCGAGCCTCGGGACTCAGTGCCACTGCCCAAGGCCTCCATGGCTGAGCCTGGAGGCTCTTGGAACAGGCTCCGCGCCCAAGCTGGCAGACATGGGTGCTCTCTGGAGCCGTCAGAGAGGGCAGAGAGCTCGTGGTTTATGGTGTAAAGGCTGGGAGCTTGGAGGGGGTCGTGTGTGGGGCTGGACTCTGAGGCGGCCAGAGGCCTAGGAACGTTATCCTGGGCACACCGTGCGTGGTGTGCAGTCTGAGTCATGCTCCCTGGGTAGGGCATCCAGCTCCCAGCCTGGGAGTGCTGAGAGCCAAATCCACCGTAGAGCAGGGGTGAGAGTCAGGGTCCCACCTCCTCTATCTGCCGGCAATCCAGTGGTGACCTAGGGTAAAAGCTTGAGAGTCCCATACACACGGTCATCCCACGACATACCTCACAGGCCAGGCAGGGACACACAGCCCCCTTCCCTCCCTCCCAGGTACCGTCATAGCTGCTAGTGTGACTGAAGGCAGTGTCCCTGGCCCCAGCTGAAGCACCGTAGCCAGCCAGCGGGCTCACGCACCTTGGCCTGTTGCTCCTAGGGTCACTTGTGCCATTCAGCCAAGGGGACGACCGTGCCTGCTGGCCCAGCTGAGCTCCGCCCAGTGAGCCCACCCCCCATTCTCCTGCCACTGACTCTCGCTCTTCTGCTTTTCCCAGCAGGAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAGCTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCACTGGCATCCGGCTGCCTGCCCTCCCTGCCTCCCCCAGGGTCCCTTCAGAGGGTCCTGGGTTTTCTGAACACCCAGAGGGGCCTCCGGCGCTCCCTCCAGCCATCCCTTTTAGTTTCACCCTCCTGGTTCAAGCAGTGTTCTTTCTCTATCAGGCCTGGTGGCTGTTGCATGGGGCTCCCCAAGGCAAGGGGTGGCCCCAGGCCAGTGGGTTGGAAGACAGGGTGACCAGAGAAGAGGGAAGCCCGAGGGGGCCGAGCATCAGCCTGAATTGCGGGTGCCCTGCCTGGGTGCCGTGTGAGAGGCCAGCGTGTGTGGGGTGGGGAGGGCCGCCACAGCCCCCAGGCGCTATCTGTGAAGCTACGGCTCCTCCCTCCATCTTCCTCCCCTTTCCCTTCCAGCCCCTTTTCCAGGAACCTTGCCACACCCACACCTGCAGCCTCCCCTCCCCGGCCCTCCCACCACTGCTGCGGCGCGGCCGGCCCCGGCCGTGTGCTGCGCTTGCCTTACCAGCTCTCTCCTCGCTTTTCTCTCCCGTTTTCTCTCTGCTTTCTCTCCAACTGCCAG
Seq C2 exon
CCGATCGGGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAAACAGATCCCTCCTCTTCTCGGAGACCTCCCTTTCCAAGCCTGCCTGGACGGCTGTTCTGTGACTTGACAGTGGCTCCCCCAGCCCCAAAGCCAGCCCCCTTCATCTGTGACTTAATCTGTTGTAGTGGTGAGCTGATACATTCAGGTGTGACCGTTGGTGAAAACTTGTGCCCCTTCTGTGGTATGCCCTTGCCCTGTTCTATAAATATCTATAAATACTCATATATATACACACCTACACATGGCCAACCGCCTCGCCTCTAGCGCTGGGAATCAGTCACTGTGCTATCCTTGTGGAGTCTTGTGGCCCAACTACCAGAGAACGCTGTCCCCCGACATCCCACTCCAAAGTGTGCCACCTCCAGTGAGCCTCCTTGTCATGCCCGGCCTGTGGACAGCCAGCCCCCGCCATCCCTCCCACCCCCTACCAAGCATGGGGGTGCTGTGCAGGCAGCCGTGTGGCCTGACAGTTTCTACCAGTCCTGCTGTCCCTCGGCTGAGAATAAAACCCATTTCTGGATGATGGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976:ENST00000372923:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains