MmuINT0051755 @ mm10
Intron Retention
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32308471-32312342:-
Coord C1 exon
chr2:32312127-32312342
Coord A exon
chr2:32309065-32312126
Coord C2 exon
chr2:32308471-32309064
Length
3062 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCTTTCTCTCCAACTGCCAGCCG
3' ss Score
4.85
Exon sequences
Seq C1 exon
ATCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGATCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
Seq A exon
GTGAGTAGGGGCTTAAAGCCCCGGGAAAGGCCGCCAGGCGGGCGTAACCCGGAGGGAGGTAGAGTCGGATAGATCCTCGGCCTAGCAGCAGAAGCGACCCTCTCCATCTTAGGCGTTGGGGTCGTAATGCAAGGCCAAGGGACCTGCGGCCACGGGCAGGCGGTCCTGCCCCGCAGGGGGCGCTGAGTCCCGGAGGTGGTCGTTTCTGGGAAGGGGGCTCTGGGGCTCAAACCACTTGCCCCCTTCTTTTCAGCACTTGCATGGCGCTTCCCTCTTTTTTTCATTTTCTCTCTGTGGCTCCCACACTTTGCATTTCTTAAACCCTTGCCTTCCATCCTCCTCCATTCCACTCTTCACTGACCCGGCCCAGCTCCTGGTGAGCCTAACTCAGGTCTAGGTTTCTGAACCGTGTGGTTTTCTTCAGTTACATTCAGAGCTACCTTGATGCCCCACTTTCCCCAGCTCTGACTCTTTTGAGCTGTCCCAGAATGCTGTTCAGCCTCTGGCCCACAGTGTCAGGCCAGGCTGTGACTGTGTGACCAAGCAAGGTGTGATGATGTGTATGTGGGCGTGCACACGGGTGTGAATGTGAGATCGGCACCCAGGTGCGGACTAGGATAGAAAGCAGCTGGGGATGGGATCTAGGAATGGTGAACAGTCTGGTGGTCTGAAACCAGATGGTGGGTAGGGACAAGGATCAAAGACTACCCTGCTGCTAGAGATCTCCAGGAAAAAGGAATATACTTCATCCCTTGGCTTTGCCTTCTTTATCCATGACTGGCCTTCCAGGAAGCTCACTCTAGTAACCAACTCAGTCTGCCCTGTTTCTGCTGACTGTGGCTGGTCTCTGAGAAAGAACACATGATCTGATAGACCAAAAGCATCTATCTGGGAATCTAGATGACTGAAGGACAGAGCTAGGGGCCTAGCCCCCATACACTAAACGAGGCAGGGATGGGCTTACTCTGTGGGACTCTAATGTCTGGAACAGTTAAGACAGGACTGGGAGTCCAGAAATGCTGGTTCACTTCCCTTAGGCAAGTCATTTTCCCTCTCAGGGCTTTAGTTTCCTTCTAAATACATGTGTGTCCCCTGACATTTCCCCAGGGGAGTGTGAGATTGACAGAGACAGTGGGCTGCTTTACTAATGGTCAATGGTAGGGTGGGGTAGGTTGGAGATTTGTAGAGACTCAATGATATAGGGAGCCATGGAAGGTTCTTGAGCAAAGAAATGACAGCTGGATCCTAAAGTGCAAGCCCTGTCCTTTACGGAGCCCTATGGTAACCCTGTCAGCACACCAGGCCTGGATGTGCAGGGAGCTGGTGCAAAGGCCTTCTCTGTGCAGGCGAGCTTCTGTGTTGTGACAGCTCATGCGTGTGCTTCTGTGTGCTGAGTGGCTGCATGTCCCAGATCCGTGCTGCACGACGTATTGGCCGGCAATGGTGCTGGGCACTGGGAGGTGGGAGGGAGATATATGCGTGTTTGTGGGCATGTGTGTTAACGTGTGCACGCAGGGCCTTAAGGCCTCACAGCATGTGTGTGCACGCCCAGGCGTGTGCGTGTGTGTGTCCCCTAACCCCCAGCCTGGCCCACCTGTGTGTTTGTGAACTGCCCTGTTGATTTCGTGCTGTCTTTCAGAATCACTATCAGTGACCCCTGAGGAGTGTCAGCTACGGTAGGTTATGCTCTCAGCCTGCTGCATGAACAGTGTGTCTACCCCTCCCTCCTCGCTGCACCAGCTCCATGCTGAGGACACCTGGGACCCCTGAGCCAGGCCCCTCCTCCTTCTCCTGCAGCTCTGGACTCCCTCTTCCTGTCCTCTTCCAGCTGGCTCTCTCACTTCCCTTTCCAGTGAGCCTCGGGACTCAGCGCCACTACTCAAGGCCTTCTTGCTTAAACTGAGGGCTCTTGGAACAGGTTTCATGTCCAAGACGGTAGATGTGGGTGCTCCCTGGAGACACCAGACCACTGTTGACAGTGTAGGGACTAAGAACTAGGAGAGGGTGTCTTCAGCCTCTGAAGGGGCCAGAAGCGTTAGGACCCCCTCTTCATACCTACTCTGAACTATGCTGCCAAGATAAGAGCTTTCTCCTTCCAGCCTAGGAGCATGGCGACTAAATTCACCACAGGGCAAGCATGAGAATCGCGCTGGCAAAGCCAGGCTCTGACTGGTGACTTTAGACAACTTAAGAGCCTTTGCCTTTCTGCCAGCGCCTGAGGGCTCGCAGGCAAGGTGAGGATCTCATTCATCCTTGACATTGCACACCTGTAGCTAACAGCCACCTCGTCAGCCCCCGACATAGAGCCAGCCCATCAGCTCCAACATTTGACCTGTTTTCAGAGTGACCTGTGCCTTTTAGCCGAAGGCAATGCATTGTCTACTGACTGGGAAAGTCAACTTGAGTTCTGCCTGGCTGGCCACAGATCTCGGTTACCCTGTCCCAACTCTTCCCCAGCCATTGACGCTCACCCTTCTGCTTTTCCCCAGCAGGAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAACGGAGGCTCCCCTCTTAGACTTATAAGTCTGTGGCCGCAGGCATCGGCTGCCTGCCTCCCAGCCTCCCCAGGGTCCCCTCAGAGGACTCCTGACTTTCTGACCACCTGAGGGGCCTCCAGCGCTCCCTCCAGCCATCCCCTTTAGCTTCAATCTCCTGGTTCAAGCACTTCTGGCCTCATGGCTGTTACATGGGACTCCCTGAGGCTTGGGGTGGCCCTGAGCCAGTGAGATGAGAGACAGTGAGCAAAAATGAGGGAGGCCCTGTGGTGCATTGCCTGGGTGGTGTGTGAGAGGCCGTGTGTGTGGCAAGAGAGGGCCACCAGCCTCTACTCAGACTACCTGCTAGTTACGGCCCAGCACCCCATCTTCCCTTTCATTCATCAACTGTGCATCTCTTCCGGGAACCCTGCCCACATCCACACCTGCCTCAGCCCCTGCCTCTGCTGGAGGTGGCTGCTCTTGCCTTACCAGCTCTCCTTCCTTTTCTCTCTTCCGTTCTCTCTCGGCTTTCTCTCCAACTGCCAG
Seq C2 exon
CCGATCGGGTCAGGCAAGTCCGTCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCCTACTCCTCGGAGACCTCCCTTACCAAGCCTGCCTGGACAGCTGTTCTGTGACTTGACAGTGGCTCCCCCGGCCCCAAAGCGTCCTATTCATCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGATGTGATGTTGGTGAAAACTTGTGCCCCTCTGTGGTATTGCTCCTGCGACATTCTATAAATATCTATAAATATACCTATATATACATATATATACATATATATGGCTGACACAGCCTCGCCTGTAGTGTCAGAATCAACCACCATGCTGTCCTTGTGGAGTCTTGTGGTCCAACAAGGGAACGCTGTCATCCTGACAACCCCCCCTCCAGTGTACCACCTCCAGTGAGCCCCCCTGTCCTCCTGGCCTGTGAACAGCCATCCCCTTGGCCATCCCAACCCTGCAGCAAGGGGATGCTGCAGCAGCAGCAGCTGTGCAGTTCTCTGGTAGCCACCAGTCTTGCTGTCTCTTGGCTGAGAATAAAACCCATTTCTGGATCATGGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825:ENSMUST00000113365:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types