GgaINT0123846 @ galGal3
Intron Retention
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5654437-5657776:-
Coord C1 exon
chr17:5657558-5657776
Coord A exon
chr17:5654474-5657557
Coord C2 exon
chr17:5654437-5654473
Length
3084 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GATTTCATGTTGTCTTTCAGAAT
3' ss Score
9.99
Exon sequences
Seq C1 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq A exon
GTAAGTCCTGTAGTGCGGATCCAGGCAGGCGGGGCGTGTCCAGAATTTGGGTAGCAGTTCCGACAGTACCTATTCTGCCTGGACTATACAAATCATTTGGAATGCTTGGTTTGGGTTCAGTCTTGGGCTGTCTGAATTTGATCCGTAGGCATGAGCATCACTGGCCACTGAGGTATCATACAGATGATGCAGTGTTAAGGCAGCTCTTGAGAACAGAAGGGCAGCCTCCTCTCCGAACCAGACTCCATGCATGGGTTGGGGGAAGAGGACCTGGTACATGAGAGCTTTAATAAAACAATCGTAGTTCTTCTGCTTGCAAGTAGTAGGGGGTCACCAGGAAATCACAGGACTAGAGTGACAGCATCCCTCTCAAGGCAGTTCCCCTCTGTATTGAATTCCCCAAAGGCTGCAGCTGCCCTTCTCCTGGCAGTTTTCTCAAGGTGAAGTTAGGGAGGACCTTCATCTGGGCTATTTAGATGCTTTTTTGTTAGGTGGATACCGTGATAGCACTGGCAGGGAAGCACTTTTTGTAGATGTTTTTGTTGTTTCTGCAGTCAACTTGAATGTTTTCCAGCCTGAAGGGCTCAGGTGACACAGCTTTGCTTTCCTGTTAGGAAATGTAACTCCTGTCCCGTTCAGTCACTTCATGCACCCTTCCATGTAGTAATAAGGGGTTATCCCCTGGGTGGCTATGCACTTGGTCCTGAAGAGCGCTAGGGAAGCAATTTGGGACCAGGAATGCACATGGTTGGTACTTGATCTCCCTGTGAGGAAGAGAAAGCAATTGCAGCATAAAGAATGGATATAACCATAACCCCCACTCAGTGACACCTGTGGGAACACTTCCCTCGGGTTGTAGTGCCCCAGCTCTTACTTGGCACTGCCTGTTTGGAAGGGGGGTATTCTCAGGCTGCCTCCAGCCCAGAAGTGGATGAATCCAAAGAGAGAAATCTGTTCCTGACTTGGGTGTGTGCAGATAGTTTTACTTTCTTGGTGCCTCTGCCCCAGTTTTCAGCACGTGCCCTCCATAACCTGCCCAGTTGTGCCTCAGTACTGCCCCGGGGACTGCAGTCCTGCAGGTGGCACCTGTGGATGTCAGCATGCTTTTGCTGTGGATTTTTGGCTCTTGCTTCTTTGTGACCCTGCTTCTCCATATACTTCTGTTTTGTGGACTTGTTTTTAGTATATTTACGTTGTGTTCCGTCTCCATCTTTCTACTTTCACAGTTTCATTTCTTCACTCATGAAAAATATTCTATATACCCGGTCACAATAGGATCCCCTAAATGGCTGGAATGAATTGGCATTCTGTTGGTTTTTTTTTTAATGAAATCTGTCATAGCTTACCTTAATGGCTTTTCTGCCTCATGTGTGAAATAGAAGAGGTTAAGGGAACGTGGGGAACTGCACAGGAGTGGCAGAAGAAAGTGTTTGATGCTTAGCAACCCCTTGGTGTAGAAGGAGGGCTGGATTGCATGCTACAGACTGCCCTGATCTGGAGTTGAGAAAGTTAGTTCCTGAAGTTGTGAAGTGAAGAAGTTCTCATGCTCATTCTCTGACCCCCCTCTCTGATTCTTCCAGTCGTTCATAGACTCCTCCGGATCCTGATACCAGCTTGTCATTTGAGTTCACTGATGAACGGAGAATTTCCAATGACAAGGGACTCTTTCTCTTCTTCTCCTGTATATAGAATAAGAATGTTCCCTGCTAGCACTTGGACTCGGGTCCTTCTGCCATGGGTGAACGAATGCCATCTCCACTGTTGCTTTTTTAATACCCATCTTCTTCCTTGCTAACTGGGCTCCACTACTTGGTGTGTGTGTGTGTGAAAAGAGCTCGTGTAGGTGGCATGAGTGGGCTGTGCCCTGGGAGCTGGAGGTGCGTGGTGGTGGCTGGGTGTATGCTATGTGCATGTGATGCCTATGTAGACGTTCAGCTGTGTGCTTGTGCCTCTATTTATGGACACCTCTGACGTTGTGGATGATGAACTTAAAGACATGCTTTCAGATACAAACACCACATGGTCCATTTTCTTTCATAGGAAGGTTCTCCTGCATGTAATTAAGTACAATTAAGGCTGATTTTTTCCACCATACCTCTGTACATAGCATTTATTCAGTCTGCTGCAGACGTCCACGATACCAAACACGCTCCCTTGGGAGCTGCAGATAATGGCAGGTCCTGTCTCTGTGCAGCGAAGGGCTGCGTTTGGGCTGGATGCCCACTGGGGCTGTTGAGGAGTTTGTCTGGAAAAGGAAACTGTAAAGACACTCTTCCAGGTACTTGGTCTCTTCATTTTAAAACGGTTTGGCAAAAACTGTAGGTGAAAGAGTTTAGGCAAATTCAAGGGAGAAAAAAGGAAGTTGAAATGAGGATAACTTAACAACTGGAAAAACGTGCTGAACGCAGTGATGGGTTCTCTGCTTTTTGGTAAGCCTATGGAAAAATGATGCAAGCAGTCAGCATCGCTGTAAGCATAACTTCTGTGTTTTTAGAACTGAGTTATTCAGGAGGTCAAAGTAATGATCTCATGATTAGTGACCTTTTAAATGTCTTTGCCTTCTGGGCAGTGCTCAGTGCACCACAGCACCTCCCGCTCTCCTGAGCTCTCTGTTCAACTCTGACACTCAATATACGGTCAGGAGATGGTCAGAAGGTGTGAAGCCTCAGTGAGAGCCAGGTCACCCCACGTGTGCCCAGGCAGCTGGTGCTGAGACCTGGCTGAGCAGGTGTGAGTGTGCTTGGGGTCTCGGTCTGGATGTGCCAATAGACCTGTGTATCCAGCTGGGTGGGAGGATGAGCAGCAACTGGTGGTGTGTGGGTACATAAATGGCTCTGCACACACCCCTGTGCACGGCAGGGTTTTGGGTGTGCGTGTGATGAGGCTGCGAGTGGATGTGAAGTCCTGCATGGCCGAGTGCAGCCCTACCCAGCAGTGCACACTTGTGTGGTGTTCTGGGAGGGGGGGGCATGCGAATGTGGCTCCGTGCAAGCGCATGTCTGTCTGTTCCACCTTCCTGACAGTCTGTTTGGCCTCTGCCTTGAACTGTCTGAACTGCCATGTTGATTTCATGTTGTCTTTCAG
Seq C2 exon
AATCACTATCAGTGACCCCTGAGGACTGGCAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852:ENSGALT00000039847:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]