GgaEX6015059 @ galGal3
Exon Skipping
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5654437-5658423:-
Coord C1 exon
chr17:5658182-5658423
Coord A exon
chr17:5657558-5657776
Coord C2 exon
chr17:5654437-5654473
Length
219 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTTTGTTTGTCAGGTC
3' ss Score
11.03
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACGAAGGACTTCATCCATTCGGAGCTGCTAGCAAACCTGTACTCGTGTGGCGACCAGAATACGCTGATGGAGGAATCAGCAGAGCAGGCCCAGCGGCGTGACGAAATGCTGCGCATGTACCATGCCCTGAAAGAGGCCCTCAACATCATCGGGGACATCAACACCAGCACCATCAGCACCCCAATGCCCCCACCGGTGGACGACTCTTGGCTGCAGGTGCAGAGCGTACCGTCTGGACGCAG
Seq A exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq C2 exon
AATCACTATCAGTGACCCCTGAGGACTGGCAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-'26-26,'26-22,27-26=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTCGGAGCTGCTAGC
R:
CTGCCAGTCCTCAGGGGTC
Band lengths:
261-480
Functional annotations
There are 2 annotated functions for this event
PMID: 9148966
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis. ELM ID: ELMI000178; ELM sequence: PSRPNR; Overlap: FULL
PMID: 21689596
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI002614; ELM sequence: VPRITIS; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]