GgaEX0006670 @ galGal3
Exon Skipping
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5650627-5657776:-
Coord C1 exon
chr17:5657558-5657776
Coord A exon
chr17:5654437-5654473
Coord C2 exon
chr17:5650627-5650693
Length
37 bp
Sequences
Splice sites
3' ss Seq
GATTTCATGTTGTCTTTCAGAAT
3' ss Score
9.99
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq A exon
AATCACTATCAGTGACCCCTGAGGACTGGCAGCCACG
Seq C2 exon
CAGAAGGGGCCCTGCCTCACCTACTCGACCTACCATAATCCGACCGGCTGAACCGTCCCTCTTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-'27-27,'27-26,34-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGTTCCTTCTCGACCT
R:
TCTAAGAGGGACGGTTCAGCC
Band lengths:
113-150
Functional annotations
There are 1 annotated functions for this event
PMID: 21689596
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI002614; ELM sequence: VPRITIS; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]