GgaALTA0002483-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5650627-5657776:-
Coord C1 exon
chr17:5657558-5657776
Coord A exon
chr17:5650691-5650693
Coord C2 exon
chr17:5650627-5650690
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGTTTCCTGCTTTTTCACAGCAG
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq A exon
CAG
Seq C2 exon
AAGGGGCCCTGCCTCACCTACTCGACCTACCATAATCCGACCGGCTGAACCGTCCCTCTTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-27-28,27-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGTTCCTTCTCGACCT
R:
GTTCAGCCGGTCGGATTATGG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]