GgaALTA0002483-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5017923-5021874:-
Coord C1 exon
chr17:5021838-5021874
Coord A exon
chr17:5018092-5018094
Coord C2 exon
chr17:5017923-5018091
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGTTTCCTGCTTTTTCACAGCAG
3' ss Score
7.71
Exon sequences
Seq C1 exon
AATCACTATCAGTGACCCCTGAGGACTGGCAGCCACG
Seq A exon
CAG
Seq C2 exon
AAGGGGCCCTGCCTCACCTACTCGACCTACCATAATCCGACCGGCTGAACCGTCCCTCTTAGATTTATAACCCGAGGCTGCAGACAGCTGGCGACGAGCGCCGTGCTGGCGGCTTCCCCATCCCACCTCCCCTCCACAGCCACAGTCACTCCTCATCCATCCCACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-35-35,35-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTGACCCCTGAGGACTG
R:
TCTAAGAGGGACGGTTCAGCC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]