HsaALTA0002576-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128253101-128254055:+
Coord C1 exon
chr9:128253101-128253137
Coord A exon
chr9:128254006-128254008
Coord C2 exon
chr9:128254009-128254055
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CGCTCTTCTGCTTTTCCCAGCAG
3' ss Score
7.06
Exon sequences
Seq C1 exon
AATCACTATCAGTGACCCCTGAGGAGCGTCAGCCATG
Seq A exon
CAG
Seq C2 exon
GAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-74-84,74-83-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development