RnoALTA0012444-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11339042-11342062:-
Coord C1 exon
chr3:11341847-11342062
Coord A exon
chr3:11339245-11339247
Coord C2 exon
chr3:11339042-11339244
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCTTCTGCTTTTCCCCAGCAG
3' ss Score
8.72
Exon sequences
Seq C1 exon
GTCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCTCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
Seq A exon
CAG
Seq C2 exon
GAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCATCGGAGGCTCCCCTCTTAGACTTATAAGTCTGTGGCTACAGGCATCGGCTGCCTGCCTCCTAGCCTCCCCAGGGTCCCCTCAGAGGACTCCTGGGCTTTCTGACCACCTGAGGGGCCTCCAGCGCTCCCTCCAGCCATCCCCTTTAGCTTCGATCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835-46-49,46-48-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCCCTGACCCCTTT
R:
CAGGTCTCGTAGGTGAGGCTG
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]