RnoEX0029036 @ rn6
Exon Skipping
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11338081-11342062:-
Coord C1 exon
chr3:11341847-11342062
Coord A exon
chr3:11341283-11341286
Coord C2 exon
chr3:11338081-11340181
Length
4 bp
Sequences
Splice sites
3' ss Seq
GGCTGTGATTGTGTGACCAGCAA
3' ss Score
2.93
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
GTCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCTCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
Seq A exon
CAAG
Seq C2 exon
AATCACTATCAGTGACCCCTGAGGAGTGTCAGCTACGGTAGGTTATGCTCTCAGCCTGCTGCATGAACAGTGTGTCTGCCCCCTCCTCCTCGCTGCACCAGCTCCATGCTGAGGACACCTGGGACCTCTGAGCCAGGCCCCTCCTTCTCCTGCAGCTCTAGACTCCCACTTCCTGTCCTCTTCCAGCTGGTTCTCTCACTTCCTTCCCAGTGAGCCGCGGGACTCAGCGCCACTACTCAAGGGCTTCTTGCTTAAACTGAGGGCCCTTGGTACAGGTACCATGCCCAAGATATGGTACTGATATGGGTGCTCTCTGGAGCTGTCTAAGACACCAGACCACTGTTGACAGTGTAGGACTAAGGACTGGGAGAGGGTGTCTTTGGCTGGCCTCTGAAGGGGCCGGATGACAGTGTAGGACTAAGAACTGGGAGAGGGTGTCTTTGGCTGGCCTCGAAGGGGCCAGAAGCTTTAGGAGCTCATCTTCAAACCTACCTTGAACTCTGCTGCCCAGATAGAGCTTTCTACTTCCAACCTAGGAGCATGGGCAACTAAATCCACCACAGGGCAAGCATGATAATCCCGTTGGCGGAGCCAGGGCTCTGATTGATGACTTTAGATCACTTAAGAGCCTTTGCCGTTCTGCCAGCCCGATAGTTCACAGCAAGGTGAGGACAGGTAGCCCCTTTTCCACTCATCCTTGGCATAGAACACCTGTAATTATCAGCCACCTCCTCAGCCCCAGACATAGAGCCAGCCATCAGCTCCCACATTTAACCTATTTTCAGAGTGACCTGTACCTTTTAGCCGGTGGCACTGCGGTGTCTATTGACTGGGCGAGTCAACTTGAATGCTGCCTGGTTGGCCAGAGATCTCTCAGTTACCCTGTCCCAACTCTTCCCCAGCCATTGACGTTCACCCTTCTGCTTTTCCCCAGCAGGAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCATCGGAGGCTCCCCTCTTAGACTTATAAGTCTGTGGCTACAGGCATCGGCTGCCTGCCTCCTAGCCTCCCCAGGGTCCCCTCAGAGGACTCCTGGGCTTTCTGACCACCTGAGGGGCCTCCAGCGCTCCCTCCAGCCATCCCCTTTAGCTTCGATCTCCTGGTTCAAACACTACTGGCCTCATGGCTGTTACATGGGACTCCCTGAGGCTTGGGGTGGCCCTGAGCCAGTGAGATGGGAAACAGAGTGAGCAGAAAAGAGGGAGGCCCTGTGGTGCATTGCCTGGGTGGTGTGTGAGAGGCCGTGTGTGTGGCAAGAGAGGGCCACCCAGCCTCTCCCCAGACTACCCTCTAGTTACCGCCCAGCACCTCCCATCTTCCATTCATCAACTGCCCGTCTCTTCCGGGAACCTTGCCCACATCCACACCTGCCTCATCCCCTCTGCCTCTGCTGAAGGTGGCTACTCTTGCCTTACCAGCTCTCCTTCCTTTTCTTTCTTCGGTTCTCTCTTGGCTTTCTCTCCAACTGCCAGCCGATCGGGTCAGGCAAGTCCGTCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCCTACTCCTCGGAGACCTCCCTTATCAAGCCTGCCTGGACAGCTGTTCTGTGACTTGACAGTGGCTCCCCCGACCCCAAAGCGTCCTATTCATCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGATACATCCAAATGTGATGTTGGTGAAAACTTGTGCCCCTCTGTGGTATTGCTCCTGCGACATTCTATAAATATCTATAAATATACCTATATATACATATATATACATATATATGGCTGACACAGCCTCGCCTGTAGTGTCAGAATCAACCACCATGCTGTCCTTGTGGAGTCCTGTGGTCCAACTACAAGGGAACGCTGTCATCCTGACATCCCCCCTCCAATGTGCCACCTCCAGTGAGCCTCCCTGTCCCTTGGCCTGTGGACAGCCATCCCCTTGGCCATCCCCACCCTGCACAAGGGGATGCTGCACCAGCAGCTGTGCGGTTCTCTGATGGCCACCAGTCTTGCTGTCTCTTGGCTGAGAATAAAACCCATTTCTGGACAATGGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000047921fB4337
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCCCTGACCCCTTT
R:
CACTCCTCAGGGGTCACTGAT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]