MmuEX1008783 @ mm10
Exon Skipping
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32308471-32312342:-
Coord C1 exon
chr2:32312127-32312342
Coord A exon
chr2:32311579-32311582
Coord C2 exon
chr2:32308471-32310487
Length
4 bp
Sequences
Splice sites
3' ss Seq
GCTGTGACTGTGTGACCAAGCAA
3' ss Score
-1.79
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
ATCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGATCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
Seq A exon
CAAG
Seq C2 exon
AATCACTATCAGTGACCCCTGAGGAGTGTCAGCTACGGTAGGTTATGCTCTCAGCCTGCTGCATGAACAGTGTGTCTACCCCTCCCTCCTCGCTGCACCAGCTCCATGCTGAGGACACCTGGGACCCCTGAGCCAGGCCCCTCCTCCTTCTCCTGCAGCTCTGGACTCCCTCTTCCTGTCCTCTTCCAGCTGGCTCTCTCACTTCCCTTTCCAGTGAGCCTCGGGACTCAGCGCCACTACTCAAGGCCTTCTTGCTTAAACTGAGGGCTCTTGGAACAGGTTTCATGTCCAAGACGGTAGATGTGGGTGCTCCCTGGAGACACCAGACCACTGTTGACAGTGTAGGGACTAAGAACTAGGAGAGGGTGTCTTCAGCCTCTGAAGGGGCCAGAAGCGTTAGGACCCCCTCTTCATACCTACTCTGAACTATGCTGCCAAGATAAGAGCTTTCTCCTTCCAGCCTAGGAGCATGGCGACTAAATTCACCACAGGGCAAGCATGAGAATCGCGCTGGCAAAGCCAGGCTCTGACTGGTGACTTTAGACAACTTAAGAGCCTTTGCCTTTCTGCCAGCGCCTGAGGGCTCGCAGGCAAGGTGAGGATCTCATTCATCCTTGACATTGCACACCTGTAGCTAACAGCCACCTCGTCAGCCCCCGACATAGAGCCAGCCCATCAGCTCCAACATTTGACCTGTTTTCAGAGTGACCTGTGCCTTTTAGCCGAAGGCAATGCATTGTCTACTGACTGGGAAAGTCAACTTGAGTTCTGCCTGGCTGGCCACAGATCTCGGTTACCCTGTCCCAACTCTTCCCCAGCCATTGACGCTCACCCTTCTGCTTTTCCCCAGCAGGAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAACGGAGGCTCCCCTCTTAGACTTATAAGTCTGTGGCCGCAGGCATCGGCTGCCTGCCTCCCAGCCTCCCCAGGGTCCCCTCAGAGGACTCCTGACTTTCTGACCACCTGAGGGGCCTCCAGCGCTCCCTCCAGCCATCCCCTTTAGCTTCAATCTCCTGGTTCAAGCACTTCTGGCCTCATGGCTGTTACATGGGACTCCCTGAGGCTTGGGGTGGCCCTGAGCCAGTGAGATGAGAGACAGTGAGCAAAAATGAGGGAGGCCCTGTGGTGCATTGCCTGGGTGGTGTGTGAGAGGCCGTGTGTGTGGCAAGAGAGGGCCACCAGCCTCTACTCAGACTACCTGCTAGTTACGGCCCAGCACCCCATCTTCCCTTTCATTCATCAACTGTGCATCTCTTCCGGGAACCCTGCCCACATCCACACCTGCCTCAGCCCCTGCCTCTGCTGGAGGTGGCTGCTCTTGCCTTACCAGCTCTCCTTCCTTTTCTCTCTTCCGTTCTCTCTCGGCTTTCTCTCCAACTGCCAGCCGATCGGGTCAGGCAAGTCCGTCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCCTACTCCTCGGAGACCTCCCTTACCAAGCCTGCCTGGACAGCTGTTCTGTGACTTGACAGTGGCTCCCCCGGCCCCAAAGCGTCCTATTCATCATCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGATGTGATGTTGGTGAAAACTTGTGCCCCTCTGTGGTATTGCTCCTGCGACATTCTATAAATATCTATAAATATACCTATATATACATATATATACATATATATGGCTGACACAGCCTCGCCTGTAGTGTCAGAATCAACCACCATGCTGTCCTTGTGGAGTCTTGTGGTCCAACAAGGGAACGCTGTCATCCTGACAACCCCCCCTCCAGTGTACCACCTCCAGTGAGCCCCCCTGTCCTCCTGGCCTGTGAACAGCCATCCCCTTGGCCATCCCAACCCTGCAGCAAGGGGATGCTGCAGCAGCAGCAGCTGTGCAGTTCTCTGGTAGCCACCAGTCTTGCTGTCTCTTGGCTGAGAATAAAACCCATTTCTGGATCATGGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.956 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000113352fB8974
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCCCTGACCCCTTT
R:
CACTCCTCAGGGGTCACTGAT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types