GgaEX0006670 @ galGal4
Exon Skipping
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5016759-5025177:-
Coord C1 exon
chr17:5024959-5025177
Coord A exon
chr17:5021838-5021874
Coord C2 exon
chr17:5016759-5016819
Length
37 bp
Sequences
Splice sites
3' ss Seq
GATTTCATGTTGTCTTTCAGAAT
3' ss Score
9.99
5' ss Seq
ACGGTACGT
5' ss Score
11.34
Exon sequences
Seq C1 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq A exon
AATCACTATCAGTGACCCCTGAGGACTGGCAGCCACG
Seq C2 exon
CCGGCCGGGTAAGGCCAGCCCCTCCCGCCCGGAGAGCCCCAAGCCACCATTTGACATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000007750fB719
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGATCCCTTTGGGCC
R:
ATGTCAAATGGTGGCTTGGGG
Band lengths:
128-165
Functional annotations
There are 1 annotated functions for this event
PMID: 21689596
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI002614; ELM sequence: VPRITIS; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]