BtaEX0011730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98873388-98876823:+
Coord C1 exon
chr11:98873388-98873603
Coord A exon
chr11:98875740-98875776
Coord C2 exon
chr11:98876723-98876823
Length
37 bp
Sequences
Splice sites
3' ss Seq
GATTTCGTGCTGTCTTTCAGAAT
3' ss Score
9.63
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTCACCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCTGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGAGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTCGGTCCTCCCCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG
Seq A exon
AATCACTATCAGTGACCCCTGAGGAGCGTCAGCCACG
Seq C2 exon
CAGGAAGGGCCCAGCCTCACCTACACGACCTGCGGTCCCCCGACCAGCCGAGGCTCCCCTCTTAGACTTATAAGCCTGTGGCCACTGGCATCCGGCCGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307-'30-29,'30-28,31-29
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000032743fB2219
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTTCGGTCCTCCCC
R:
TAAGAGGGGAGCCTCGGC
Band lengths:
128-165
Functional annotations
There are 1 annotated functions for this event
PMID: 21689596
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI002614; ELM sequence: VPRITIS; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development