BtaEX6046352 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98872774-98877986:+
Coord C1 exon
chr11:98872774-98873015
Coord A exon
chr11:98873388-98873603
Coord C2 exon
chr11:98877382-98877986
Length
216 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTGTCGCCCGCAGGTC
3' ss Score
13.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACCAAGGAATTCATCTTCTCGGAGCTGCTGGCCAACCTGTATTCGTGCGGGGACCAGAACACACTGATGGAGGAGTCGGCCGAACAGGCACAGCGGCGTGACGAGATGCTGCGCATGTACCACGCACTGAAAGAGGCGCTCAGCATCATCGGCGACATCAACACGACCACCGTCAGCACGCCCATGCCCCCGCCTGTGGACGACTCCTGGCTGCAGGTGCAGAGCGTACCGACCGGACGCAG
Seq A exon
GTCACCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCTGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGAGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTCGGTCCTCCCCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG
Seq C2 exon
CCAGCCGATCGGGTCAGGCAAGTCCATCCCGTCCTGAGAGCCCCAGGCCCCCCTTCGACCTCTAACCAGATCCCTCATATTCCTCGGAGACTTCCCTTTCCAAGCCTGCCCGGACGGCTGTTCTGTGACTTGACAGTGGCTACCCAACCCCAGAGCCTCCCCTCCACCTGTGACTTAGTCTGTTGTAGTGGTGAGCTGACACATCCAGGCGTGACGTTGGTGAAATTTTGTGCCCCTCTGTGGTCTTGCTCCTGCCCTGTTCTATAAATATCTATAAATACTCATATATATATATATACAAACATATCTATGGCCAAGCCTCGCCTCTGGTGTTGGGAATCAATCACCGTGCTGTCCTTGAGGAGTCTTGCAGCCCAACTACAAGGGAACACCTGTCACCCTGAATCCCCCTCCAAAGCGTGCCACCTCCAATGAGCCCCAGTGTCATGCCCAGCCTGTGGGCAGCCAGCCCCCCTCTGCCATCCTCCCATCCCAACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307-'28-31,'28-27,30-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCAGAACACACTGATGG
R:
GCTTGGAAAGGGAAGTCTCCG
Band lengths:
298-514
Functional annotations
There are 2 annotated functions for this event
PMID: 9148966
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis. ELM ID: ELMI000178; ELM sequence: PSRPNR; Overlap: FULL
PMID: 21689596
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI002614; ELM sequence: VPRITIS; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]