BtaALTD0007052-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98872774-98873603:+
Coord C1 exon
chr11:98872774-98872989
Coord A exon
chr11:98872990-98873015
Coord C2 exon
chr11:98873388-98873603
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TCTGTTTCTGTCGCCCGCAGGTC
3' ss Score
13.71
Exon sequences
Seq C1 exon
ACCAAGGAATTCATCTTCTCGGAGCTGCTGGCCAACCTGTATTCGTGCGGGGACCAGAACACACTGATGGAGGAGTCGGCCGAACAGGCACAGCGGCGTGACGAGATGCTGCGCATGTACCACGCACTGAAAGAGGCGCTCAGCATCATCGGCGACATCAACACGACCACCGTCAGCACGCCCATGCCCCCGCCTGTGGACGACTCCTGGCTGCAG
Seq A exon
GTGCAGAGCGTACCGACCGGACGCAG
Seq C2 exon
GTCACCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCTGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGAGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTCGGTCCTCCCCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307-27-27,28-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCACGCACTGAAAGAGGC
R:
GGGCTGGACGTGGGTGAC
Band lengths:
118-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development