GgaALTD0001879-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5657558-5658423:-
Coord C1 exon
chr17:5658208-5658423
Coord A exon
chr17:5658182-5658207
Coord C2 exon
chr17:5657558-5657776
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TGTCTCTGTTTGTTTGTCAGGTC
3' ss Score
11.03
Exon sequences
Seq C1 exon
ACGAAGGACTTCATCCATTCGGAGCTGCTAGCAAACCTGTACTCGTGTGGCGACCAGAATACGCTGATGGAGGAATCAGCAGAGCAGGCCCAGCGGCGTGACGAAATGCTGCGCATGTACCATGCCCTGAAAGAGGCCCTCAACATCATCGGGGACATCAACACCAGCACCATCAGCACCCCAATGCCCCCACCGGTGGACGACTCTTGGCTGCAG
Seq A exon
GTGCAGAGCGTACCGTCTGGACGCAG
Seq C2 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-24-22,26-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCATGCCCTGAAAGAGGC
R:
GGGGCTGGACGTAGGAGAC
Band lengths:
119-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]