RnoALTD0009344-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11341847-11342593:-
Coord C1 exon
chr3:11342435-11342593
Coord A exon
chr3:11342409-11342434
Coord C2 exon
chr3:11341847-11342062
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TCCGCTCTTGTCGCCCGTAGGTC
3' ss Score
12.01
Exon sequences
Seq C1 exon
AACACGCTGATGGAAGAATCGGCCGAACAGGCTCAGCGGCGCGACGAGATGCTGCGTATGTACCACGCACTGAAGGAGGCGCTCAGCATTATCGGCGACATCAACACGACCACCGTCAGCACGCCCATGCCCCCGCCCGTGGACGACTCCTGGCTGCAG
Seq A exon
GTGCAGAGCGTACCGGCCGGACGCAG
Seq C2 exon
GTCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGATCCGCCCTGGGGGGGGCTCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCCTTTGGCCCCCCTCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCTGGGGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835-43-44,44-44-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGACGACTCCTGGCT
R:
GGATCCAGCAGGCGGAGG
Band lengths:
125-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]