GgaALTD0001879-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5024959-5025824:-
Coord C1 exon
chr17:5025609-5025824
Coord A exon
chr17:5025583-5025608
Coord C2 exon
chr17:5024959-5025177
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TGTCTCTGTTTGTTTGTCAGGTC
3' ss Score
11.03
Exon sequences
Seq C1 exon
ACGAAGGACTTCATCCATTCGGAGCTGCTAGCAAACCTGTACTCGTGTGGCGACCAGAATACGCTGATGGAGGAATCAGCAGAGCAGGCCCAGCGGCGTGACGAAATGCTGCGCATGTACCATGCCCTGAAAGAGGCCCTCAACATCATCGGGGACATCAACACCAGCACCATCAGCACCCCAATGCCCCCACCGGTGGACGACTCTTGGCTGCAG
Seq A exon
GTGCAGAGCGTACCGTCTGGACGCAG
Seq C2 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-32-28,33-28,34-28-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0221213=GED=PD(56.5=64.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCATGCCCTGAAAGAGGC
R:
GGGGCTGGACGTAGGAGAC
Band lengths:
119-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]