GgaEX0006669 @ galGal4
Exon Skipping
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5016759-5025177:-
Coord C1 exon
chr17:5024959-5025177
Coord A exon
chr17:5023147-5023378
Coord C2 exon
chr17:5016759-5016819
Length
232 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTGATTCTTCCAGTCG
3' ss Score
8.04
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
Exon sequences
Seq C1 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq A exon
TCGTTCATAGACTCCTCCGGATCCTGATACCAGCTTGTCATTTGAGTTCACTGATGAACGGAGAATTTCCAATGACAAGGGACTCTTTCTCTTCTTCTCCTGTATATAGAATAAGAATGTTCCCTGCTAGCACTTGGACTCGGGTCCTTCTGCCATGGGTGAACGAATGCCATCTCCACTGTTGCTTTTTTAATACCCATCTTCTTCCTTGCTAACTGGGCTCCACTACTTG
Seq C2 exon
CCGGCCGGGTAAGGCCAGCCCCTCCCGCCCGGAGAGCCCCAAGCCACCATTTGACATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000007750fB718
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTACGTCCAGCCCC
R:
ATGTCAAATGGTGGCTTGGGG
Band lengths:
276-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]