GgaEX0006669 @ galGal3
Exon Skipping
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5654437-5657776:-
Coord C1 exon
chr17:5657558-5657776
Coord A exon
chr17:5655820-5655977
Coord C2 exon
chr17:5654437-5654473
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTGATTCTTCCAGTCG
3' ss Score
8.04
5' ss Seq
TGGGTGAAC
5' ss Score
-0.27
Exon sequences
Seq C1 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq A exon
TCGTTCATAGACTCCTCCGGATCCTGATACCAGCTTGTCATTTGAGTTCACTGATGAACGGAGAATTTCCAATGACAAGGGACTCTTTCTCTTCTTCTCCTGTATATAGAATAAGAATGTTCCCTGCTAGCACTTGGACTCGGGTCCTTCTGCCATGG
Seq C2 exon
AATCACTATCAGTGACCCCTGAGGACTGGCAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-'27-26,'27-24,31-26
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTACGTCCAGCCCC
R:
CAGTCCTCAGGGGTCACTGAT
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]