GgaALTA1011161-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004852 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr17:5016013-5025177:-
Coord C1 exon
chr17:5024959-5025177
Coord A exon
chr17:5016114-5016340
Coord C2 exon
chr17:5016013-5016113
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CGATTCTCTGCTGTGTGCAGTTG
3' ss Score
6.7
Exon sequences
Seq C1 exon
GTCTCCTACGTCCAGCCCCACGCCGCAAAGGAGAGCTCCCGCTGTGCCCCCCGCCAGGCCTGGCTCTCGAGGCCCGGCTCCTGGGCCACCTCCTGCTGGTGGGTCAGCGCTGGGTGGTGCCCCCCCTGTGCCCTCCAGGCCAGGTGCCTCTCCTGATCCCTTTGGGCCCCCACCTCAGGTTCCTTCTCGACCTAATCGTGCTCCTCCTGGTGTTCCCAG
Seq A exon
TTGGGTTCCTGTGTTACCCCAGAGCTGTGGGTGGACGTCTCGGTGCTGGTGGTAGCTGTGCTGCAGTCCGTGATCTACTGTCACTCTTGTTAATGGGATGAAATAAACTGTCGTTTCTGTATAATGAAGGACTCTACAACTAGAATAAAACCATCTCTCTTTCTCTTGCTCTTTCTCTGGGTGATTTCCAACCTGTTTGATTGTAACCAAGTCTTTTCGTCCTATAG
Seq C2 exon
AGCTTAGAAAGCTCTGCATGCGTGATGGGAATGGAGGCACAGGCGTGCAGCAGCAGCCAGGCGTTGGTGCGGAGGTGGAGGCCTTTCTCTGCTGCAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-35-40,35-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCCGCAAAGGAGAG
R:
TTTGCAGCAGAGAAAGGCCTC
Band lengths:
300-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]