MmuEX0023010 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31240670-31242409:+
Coord C1 exon
chr2:31240670-31240824
Coord A exon
chr2:31241812-31241862
Coord C2 exon
chr2:31242131-31242409
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTGATCAAGTTCCTCCACAGATG
3' ss Score
5.09
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCCTATCCTTCCAGGGGATCCTCACATCCTGCTGCAGGAGGATGGCCAAGTTCTCAGAATTATCAGCAGTCACTTAGGTGACGAAGGGCAGTATCAGTGTGTGGCCTTCAGCCCAGCCGGCCAGCAGGCCAAGGACTTTCAGCTCAGCATTCACT
Seq A exon
ATGGGGACCCCGAGGCCCAGAGAGGGGAAAGGACTTACCCCAGGTCATACA
Seq C2 exon
CACCACCCACCATCTGGGGCTCGAATGAGACAGGTGAGGTGACTGTCCTGGAGGGCCACACCGCACAGCTCCTATGTGAGGCCCGAGGAATGCCATCCCCTGCCATCACCTGGTACAAGGATGGGACCCTGCTGGCCCCCAGCTCAGAAGTGGTTTACAGCAAGGGCGGCCGGCAGCTGCAGCTGGTGAAGGCCCAGCCCTCCGATGCTGGCCTCTACACCTGCCAGGCCAGCAACCCTGCAGGGATTACGAAGAAATCCACCAGTCTGGAGGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'30-31,'30-30,31-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.833 C2=0.117
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(59.5=94.3)
A:
NO
C2:
PF0767911=I-set=WD(100=90.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTAGGTGACGAAGGGCA
R:
GGACAGTCACCTCACCTGTCT
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: