MmuEX0023010 @ mm10
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31385150-31386889:+
Coord C1 exon
chr2:31385150-31385304
Coord A exon
chr2:31386292-31386342
Coord C2 exon
chr2:31386611-31386889
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTGATCAAGTTCCTCCACAGATG
3' ss Score
5.09
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCCTATCCTTCCAGGGGATCCTCACATCCTGCTGCAGGAGGATGGCCAAGTTCTCAGAATTATCAGCAGTCACTTAGGTGACGAAGGGCAGTATCAGTGTGTGGCCTTCAGCCCAGCCGGCCAGCAGGCCAAGGACTTTCAGCTCAGCATTCACT
Seq A exon
ATGGGGACCCCGAGGCCCAGAGAGGGGAAAGGACTTACCCCAGGTCATACA
Seq C2 exon
CACCACCCACCATCTGGGGCTCGAATGAGACAGGTGAGGTGACTGTCCTGGAGGGCCACACCGCACAGCTCCTATGTGAGGCCCGAGGAATGCCATCCCCTGCCATCACCTGGTACAAGGATGGGACCCTGCTGGCCCCCAGCTCAGAAGTGGTTTACAGCAAGGGCGGCCGGCAGCTGCAGCTGGTGAAGGCCCAGCCCTCCGATGCTGGCCTCTACACCTGCCAGGCCAGCAACCCTGCAGGGATTACGAAGAAATCCACCAGTCTGGAGGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.833 C2=0.090
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(59.5=94.3)
A:
NO
C2:
PF0767911=I-set=WD(100=90.4)
Main Inclusion Isoform:
ENSMUST00000113532fB1956
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTAGGTGACGAAGGGCA
R:
GGACAGTCACCTCACCTGTCT
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types