MmuALTD0004648-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000015092 | Edf1
Description
endothelial differentiation-related factor 1 [Source:MGI Symbol;Acc:MGI:1891227]
Coordinates
chr2:25416105-25417602:+
Coord C1 exon
chr2:25416105-25416220
Coord A exon
NA
Coord C2 exon
chr2:25417371-25417602
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ATCTCGCTGGCTCGTTTCAGGCC
3' ss Score
6.77
Exon sequences
Seq C1 exon
CCAAGCTCGACCGGGAGACCGAGGAGCTGCATCACGACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGGACCTGGCCACG
Seq A exon
NA
Seq C2 exon
GCCTCAAGCTCCGGGGGAAGGACATCGGGAAGCCTATCGAGAAGGGGCCGAAGGCGAAATGAACACAAAGCCTCGAAGCCAGTGGTTCCGGCTGAGCTCTCCTGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAACGGAACACGGGGGGTTAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAACCTTGTAAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015092-5-7,6-7,7-7-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF085235=MBF1=PD(41.4=53.7),PF0138117=HTH_3=PU(29.6=29.6)
A:
NA
C2:
PF0138117=HTH_3=PD(9.3=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTGGGCAAAGTGATC
R:
CCTTCTCGATAGGCTTCCCGA
Band lengths:
114-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: