HsaALTD1010831-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000107223 | EDF1
Description
endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]
Coordinates
chr9:136862906-136863448:-
Coord C1 exon
chr9:136863351-136863448
Coord A exon
chr9:136863288-136863350
Coord C2 exon
chr9:136862906-136862999
Length
63 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
AAAGCACATCTTCTCTTTAGAAA
3' ss Score
4.72
Exon sequences
Seq C1 exon
GGGCTGCTGGCCAGAACAAACAACATTCTATTACCAAGAACACGGCCAAGCTGGACCGGGAGACAGAGGAGCTGCACCATGACAGGGTGACCCTGGAG
Seq A exon
GTGGGCAAGGTGATCCAGCAAGGTCGGCAGAGCAAGGGGCTTACGCAGAAGGACCTGGCCACG
Seq C2 exon
AAAATCAATGAGAAGCCACAGGTGATCGCGGACTATGAGAGCGGACGGGCCATACCCAATAACCAGGTGCTTGGCAAAATCGAGCGGGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107223-11-7,12-7,13-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF085235=MBF1=PD(41.4=53.7),PF0138117=HTH_3=PU(29.6=29.6)
A:
NA
C2:
PF0138117=HTH_3=FE(57.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGCCAGAACAAACAACA
R:
TCATAGTCCGCGATCACCTGT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains