RnoALTD0009868-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000016272 | Edf1
Description
endothelial differentiation-related factor 1 [Source:RGD Symbol;Acc:1308073]
Coordinates
chr3:2783828-2784469:+
Coord C1 exon
chr3:2783828-2783988
Coord A exon
NA
Coord C2 exon
chr3:2784376-2784469
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
AAGGTGCGTCTTTTCTTCAGAAA
3' ss Score
6.87
Exon sequences
Seq C1 exon
GGGCTGCTGGCCAGAACAAGCAGCATTCCATCACTAAAAACACAGCCAAGCTAGACCGGGAGACAGAGGAGCTGCACCACGACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACGCAGAAGGACCTGGCCACG
Seq A exon
NA
Seq C2 exon
AAAATCAATGAAAAGCCGCAAGTCATCGCAGACTATGAAAGTGGACGGGCCATTCCGAATAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016272-12-4,13-4,14-4,15-4-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.469
Domain overlap (PFAM):
C1:
PF085235=MBF1=PD(41.4=53.7),PF0138117=HTH_3=PU(29.6=29.6)
A:
NA
C2:
PF0138117=HTH_3=FE(57.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGGCAAAGTGATCCAG
R:
GGCCCGTCCACTTTCATAGTC
Band lengths:
117-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]