GgaALTD1008466-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009008 | EDF1
Description
Endothelial differentiation-related factor 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5ZMC0]
Coordinates
chr17:551602-552464:+
Coord C1 exon
chr17:551602-551690
Coord A exon
chr17:551691-551753
Coord C2 exon
chr17:552371-552464
Length
63 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GGCATATCATCTCTTTTTAGAAA
3' ss Score
7.23
Exon sequences
Seq C1 exon
GCCAAAACAAACAACACTTCATCACAAAGAACACAGCCAAGCTCGACCGAGAGACAGAAGAGCTGCACCATGACAGAGTTCCCCTGGAG
Seq A exon
GTGGGCAAAGTAATCCAGCAGGGTCGGCAGAGCAAGGGCATGACACAGAAGGACTTGGCCACA
Seq C2 exon
AAAATCAATGAAAAACCACAAGTCATTGCTGACTACGAATCAGGAAGAGCAATCCCCAACAACCAGGTTATGGGCAAGATTGAAAGAGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009008-4-4,5-4,6-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.688
Domain overlap (PFAM):
C1:
PF085235=MBF1=PD(41.4=53.7),PF0138117=HTH_3=PU(29.6=29.6)
A:
NA
C2:
PF0138117=HTH_3=FE(57.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACACAGCCAAGCTCGAC
R:
CCCATAACCTGGTTGTTGGGG
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]