MmuALTD0004648-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015092 | Edf1
Description
endothelial differentiation-related factor 1 [Source:MGI Symbol;Acc:MGI:1891227]
Coordinates
chr2:25560585-25562082:+
Coord C1 exon
chr2:25560585-25560637
Coord A exon
chr2:25560638-25560700
Coord C2 exon
chr2:25561851-25562082
Length
63 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
ATCTCGCTGGCTCGTTTCAGGCC
3' ss Score
6.77
Exon sequences
Seq C1 exon
CCAAGCTCGACCGGGAGACCGAGGAGCTGCATCACGACAGGGTGACCCTGGAG
Seq A exon
GTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGGACCTGGCCACG
Seq C2 exon
GCCTCAAGCTCCGGGGGAAGGACATCGGGAAGCCTATCGAGAAGGGGCCGAAGGCGAAATGAACACAAAGCCTCGAAGCCAGTGGTTCCGGCTGAGCTCTCCTGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAACGGAACACGGGGGGTTAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAACCTTGTAAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015092-8-11,9-11,10-11,11-11-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF085235=MBF1=PD(41.4=53.7),PF0138117=HTH_3=PU(29.6=29.6)
A:
NA
C2:
PF0138117=HTH_3=PD(9.3=23.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGCATCACGACAG
R:
GACCAGCCAGGAGAGCTCAG
Band lengths:
144-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types