MmuEX0030514 @ mm9
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:69934418-69943810:+
Coord C1 exon
chr2:69934418-69934552
Coord A exon
chr2:69943434-69943538
Coord C2 exon
chr2:69943711-69943810
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTCCTGCACTACCTCTCCAGCTG
3' ss Score
6.91
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GATATGGATGAGGAGATTGAGGCTGAATACAACATTCTGCAGTTTCTCCCCAGCCATCCCAACGTTGTAAAGTTTTATGGGATGTTTTACAAAGCCGATCGCTGTGTGGGAGGACAGCTATGGCTGGTTCTGGAG
Seq A exon
CTGTGTAATGGGGGCTCTGTCACTGAGCTTGTCAAGGGCCTTCTGAGGTGCGGCAAGAGGCTGGACGAAGCTGTGATTTCCTACATTCTGTATGGAGCCCTCTTG
Seq C2 exon
GGCCTTCAGCATTTGCACTGCCACCGAATCATCCACCGAGATGTGAAGGGGAATAACATTCTTCTGACGACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.5=100)
A:
PF0006920=Pkinase=FE(12.7=100)
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATGGATGAGGAGATTGAGGCTG
R:
AAAGTCAACGAGCTTAACTCCTCC
Band lengths:
234-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: