GgaEX6042357 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17935339-17937285:-
Coord C1 exon
chr7:17937151-17937285
Coord A exon
chr7:17935701-17935805
Coord C2 exon
chr7:17935339-17935438
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCCCCACTTCACAGCTG
3' ss Score
9.27
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GATGTAGATGAAGAAATTGAAGCAGAATATAATATTTTGCAGTCTCTTCCCAATCATCCTAATGTTGTTAGATTTTATGGGATGTTCTACAAAGCAGATCAATATGTGGGAGGACAGCTCTGGCTAGTACTTGAG
Seq A exon
CTGTGCAATGGAGGGTCTGTCACAGAACTTGTCAAAGGTTTGCTGAAGTGTGGCCAACGTTTGGATGAAGCAATGATTTCATATATCTTATATGGTGCTCTCTTG
Seq C2 exon
GGCCTTCAGCATTTACACAATAACCGGATCATTCATCGAGATGTCAAAGGGAACAACATTCTTCTGACAACAGAAGGTGGAGTCAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'9-8,'9-7,10-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.5=100)
A:
PF0006920=Pkinase=FE(12.7=100)
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTAGATGAAGAAATTGAAGCAGA
R:
ACGAGCTTGACTCCACCTTCT
Band lengths:
227-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]