DreEX6034845 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3889876-3893246:-
Coord C1 exon
chr9:3893112-3893246
Coord A exon
chr9:3890115-3890219
Coord C2 exon
chr9:3889876-3889975
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTGGCATTTCTCTCTTTAGTTG
3' ss Score
8.56
5' ss Seq
CTGGTACGA
5' ss Score
7.84
Exon sequences
Seq C1 exon
GATGTGGACGAGGAAATTGAAGCAGAATACAACATCCTTCGCTCCTTGTCCAACCATCCCAATGTTGTGAAGTTCTTTGGCATGTTCTACAAAGCAGATGAGCTCTCCGGAGGGCAGCTATGGCTTGTTTTGGAG
Seq A exon
TTGTGTAATGGAGGTTCAGTTACTGACCTGATAAAGGGTTTGCTGATGAGGGGAAAACGTCTCGAGGAGCCCATCATCTCCTACATCCTGTGTGGAGCGCTGCTG
Seq C2 exon
GGTCTCCAGCATCTTCACAATAACCGAATCATCCACCGTGATGTGAAGGGCAACAACATCCTCCTCACCACTGACGGTGGAGTCAAACTGGTGGACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.5=100)
A:
PF0006920=Pkinase=FE(12.7=100)
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGGAAATTGAAGCA
R:
CGAAGTCCACCAGTTTGACTCC
Band lengths:
234-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]