BtaEX6009126 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26248205-26258780:-
Coord C1 exon
chr2:26258646-26258780
Coord A exon
chr2:26248540-26248644
Coord C2 exon
chr2:26248205-26248304
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCGGCACCTCCTCTTGCAGCTG
3' ss Score
9.43
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GATATGGATGAAGAGATTGAGGCAGAATACAACATTTTGCAGTTTCTCCCGAATCATCCCAATGTTGTAAAGTTTTACGGAATGTTTTACAAAGCGGATCACTGTGTGGGAGGACAGCTGTGGCTGGTCCTGGAG
Seq A exon
CTGTGTAATGGGGGCTCAGTCACCGAGCTTGTCAAAAGTCTACTTAGGTGCAACCAGCGGTTGGACGAAGCAGTGATCTCATACATCTTATATGGGGCCCTCTTG
Seq C2 exon
GGCCTTCAGCATTTGCACAATAACCGAATCATCCACCGTGATGTCAAGGGGAATAACATTCTTCTGACAACAGAAGGAGGAGTTAAGCTCGTTGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.5=100)
A:
PF0006920=Pkinase=FE(12.7=100)
C2:
PF0006920=Pkinase=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATGGATGAAGAGATTGAGGCAGA
R:
AAAGTCAACGAGCTTAACTCCTCC
Band lengths:
234-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]